6D1T

Complex of MBD1-MBD and methylated DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.238 

wwPDB Validation   3D Report Full Report



Literature

Complex of MBD1-MBD and methylated DNA

Liu, K.Xu, C.Tempel, W.Arrowsmith, C.H.Bountra, C.Edwards, A.M.Min, J.Structural Genomics Consortium

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Methyl-CpG-binding domain protein 1A79Homo sapiensMutation(s): 0 
Gene Names: MBD1CXXC3PCM1
Find proteins for Q9UIS9 (Homo sapiens)
Explore Q9UIS9 
Go to UniProtKB:  Q9UIS9
NIH Common Fund Data Resources
PHAROS  Q9UIS9
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*GP*CP*CP*AP*AP*(5CM)P*GP*TP*TP*GP*GP*C)-3')B, C12synthetic construct
    Small Molecules
    Ligands 1 Unique
    IDChainsName / Formula / InChI Key2D Diagram3D Interactions
    UNX
    Query on UNX

    Download CCD File 
    A, B, C
    UNKNOWN ATOM OR ION
    X
     Ligand Interaction
    Experimental Data & Validation

    Experimental Data

    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 28.574α = 90
    b = 74.193β = 90
    c = 138.872γ = 90
    Software Package:
    Software NamePurpose
    REFMACrefinement
    Aimlessdata scaling
    PDB_EXTRACTdata extraction
    XDSdata reduction
    PHASERphasing

    Structure Validation

    View Full Validation Report



    Entry History 

    Deposition Data

    Revision History 

    • Version 1.0: 2018-05-09
      Type: Initial release