6AWT

Structure of PR 10 Allergen in complex with epicatechin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.215 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of PR-10 Allergen Ara h 8.01.

Offermann, L.R.Yarbrough, J.McBride, J.Hurlburt, B.K.Maleki, S.J.Pote, S.S.Chruszcz, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PR 10 protein
A, B, C, D
156Arachis hypogaeaMutation(s): 0 
Find proteins for Q6VT83 (Arachis hypogaea)
Go to UniProtKB:  Q6VT83
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, B, C
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
BEZ
Query on BEZ

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Download CCD File 
D
BENZOIC ACID
C7 H6 O2
WPYMKLBDIGXBTP-UHFFFAOYSA-N
 Ligand Interaction
28E
Query on 28E

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Download CCD File 
A, B, C, D
(2R,3R)-2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-chromene-3,5,7-triol
Epicatechin
C15 H14 O6
PFTAWBLQPZVEMU-UKRRQHHQSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.215 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 55.451α = 90.00
b = 62.507β = 90.00
c = 186.585γ = 90.00
Software Package:
Software NamePurpose
HKL-3000refinement
MOLREPphasing
HKL-2000data scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-09-12
    Type: Initial release