6ZPP | pdb_00006zpp

g7941: a virulence factor from Drechmaria coniospora

PDB DOI: https://doi.org/10.2210/pdb6ZPP/pdb

Classification: IMMUNE SYSTEM
Organism(s): Drechmeria coniospora
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2020-07-09 Released: 2022-01-19
Deposition Author(s): Leone, P., Roussel, A., Zimberger, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.209 (Depositor), 0.194 (DCC)
R-Value Work:
0.185 (Depositor), 0.187 (DCC)
R-Value Observed:
0.186 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 2.1 of the entry. See complete history.

Literature

Crystal structure of a virulence factor from Drechmaria coniospora, a C. elegans pathogen

Leone, P., Zimberger, C., Roussel, A., Ewbank, J.

To be published.

Macromolecule Content

Total Structure Weight: 21.01 kDa
Atom Count: 1,446
Modeled Residue Count: 157
Deposited Residue Count: 190
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
virulence factor	A	190	Drechmeria coniospora	Mutation(s): 2 Gene Names: DCS_06842
UniProt
Find proteins for A0A151GCU7 (Drechmeria coniospora) Explore A0A151GCU7 Go to UniProtKB: A0A151GCU7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A151GCU7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.209 (Depositor), 0.194 (DCC)
R-Value Work: 0.185 (Depositor), 0.187 (DCC)
R-Value Observed: 0.186 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.127	α = 90
b = 31.2	β = 91.96
c = 59.316	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
SCALA	data scaling
SHELXDE	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2022-01-19

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-01-19
Type: Initial release
Version 2.0: 2022-12-21
Changes: Advisory, Database references, Polymer sequence, Structure summary
Version 2.1: 2024-11-20
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.