6YTS | pdb_00006yts

Solution NMR structure of type-I ribosome-inactivating protein trichobakin (TBK)

PDB DOI: https://doi.org/10.2210/pdb6YTS/pdb
BMRB: 27989

Classification: HYDROLASE
Organism(s): Trichosanthes sp. Bac Kan 8-98
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-04-24 Released: 2020-05-06
Deposition Author(s): Britikov, V.V., Bocharov, E.V., Britikova, E.V., Le, T.B.T., Phan, C.V., Boyko, K.M., Arseniev, A.S., Usanov, S.A.
Funding Organization(s): Russian Science Foundation

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Structure and dynamics of type-I ribosome-inactivating protein trichobakin (TBK)

Britikov, V.V., Bocharov, E.V., Britikova, E.V., Le, T.B.T., Phan, C.V., Boyko, K.M., Arseniev, A.S., Usanov, S.A.

To be published.

Macromolecule Content

Total Structure Weight: 27.22 kDa
Atom Count: 1,920
Modeled Residue Count: 247
Deposited Residue Count: 247
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Trichobakin	A	247	Trichosanthes sp. Bac Kan 8-98	Mutation(s): 0 Gene Names: TBK EC: 3.2.2.22
UniProt
Find proteins for Q9LRE3 (Trichosanthes sp. Bac Kan 8-98) Explore Q9LRE3 Go to UniProtKB: Q9LRE3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9LRE3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-05-06

Deposition Author(s):

Britikova, E.V.

Funding Organization	Location	Grant Number
Russian Science Foundation	Russian Federation	19-74-30014

Revision History (Full details and data files)

Version 1.0: 2020-05-06
Type: Initial release
Version 1.1: 2023-06-14
Changes: Database references, Other
Version 1.2: 2024-06-19
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.