Download MendeleyTranslation initiation factor 4E in complex with 3-MeBn7GpppG mRNA 5' cap analog
Jemielity, J.To be published.
6YLT
Translation initiation factor 4E in complex with 3-MeBn7GpppG mRNA 5' cap analog
- DOI: 10.2210/pdb6YLT/pdb
- Classification: TRANSLATION
- Organism(s): Mus musculus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2020-04-07 Released: 2020-04-29
- Funding Organization(s): Foundation for Polish Science, Polish National Science Centre
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.67 Å
- R-Value Free: 0.246
- R-Value Work: 0.200
- R-Value Observed: 0.202
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Eukaryotic translation initiation factor 4E | A, B, C, D | 191 | Mus musculus | Mutation(s): 0 Gene Names: Eif4e |  |
Find proteins for P63073 (Mus musculus) Explore P63073 Go to UniProtKB: P63073 | |||||
NIH Common Fund Data Resources | |||||
IMPC: MGI:95305 | |||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| P3E Query on P3E | A, B, C, D | [[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[(3-methylphenyl)methyl]-6-oxidanylidene-1~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate C28 H36 N10 O18 P3 PSRZFZZOIWOJQD-RTZOWOBBSA-O |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.67 Å
- R-Value Free: 0.246
- R-Value Work: 0.200
- R-Value Observed: 0.202
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 38.3 | α = 83.993 |
| b = 38.33 | β = 87.776 |
| c = 148.76 | γ = 76.809 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2020-04-07
- Released Date: 2020-04-29 Deposition Author(s): Kubacka, D., Wojcik, R., Baranowski, M.R., Kowalska, J., Jemielity, J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Foundation for Polish Science | Poland | TEAM/2016_2/13 |
| Polish National Science Centre | Poland | UMO- 2017/24/C/NZ1/00169 |
Revision History (Full details and data files)
- Version 1.0: 2020-04-29
Type: Initial release
