Download MendeleyTrypsin inhibitor in complex with bovine trypsin
Badran, M.J., Heine, A., Klebe, G.To be published.
6YIT
Trypsin inhibitor in complex with bovine trypsin
- PDB DOI: https://doi.org/10.2210/pdb6YIT/pdb
- Classification: HYDROLASE
- Organism(s): Bos taurus
- Mutation(s): No
- Deposited: 2020-04-01 Released: 2020-12-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.163
- R-Value Work: 0.140
- R-Value Observed: 0.141
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cationic trypsin | 223 | Bos taurus | Mutation(s): 0 EC: 3.4.21.4 |  | |
UniProt | |||||
Find proteins for P00760 (Bos taurus) Explore P00760 Go to UniProtKB: P00760 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00760 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 8M2 (Subject of Investigation/LOI) Query on 8M2 | D [auth A] | [azanyl(thiophen-3-yl)methylidene]azanium C5 H7 N2 S JKCKRNYECSTMLV-UHFFFAOYSA-O |  | ||
| SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| DMS Query on DMS | E [auth A], F [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
| CA Query on CA | C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.163
- R-Value Work: 0.140
- R-Value Observed: 0.141
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.611 | α = 90 |
| b = 54.611 | β = 90 |
| c = 107.547 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2020-12-02 Deposition Author(s): Badran, M.J., Heine, A., Klebe, G.
Revision History (Full details and data files)
- Version 1.0: 2020-12-02
Type: Initial release - Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description
