First structure of a glycoprotein from enveloped plant virus
Bahat, Y., Alter, J., Dessau, M.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycoprotein | A, B, C | 288 | Tomato spotted wilt tospovirus | Mutation(s): 0  Gene Names: Gn, Gc, GP | ![]() |
Find proteins for O55647 (Tomato spotted wilt virus) Explore O55647  Go to UniProtKB:  O55647 | |||||
Protein Feature ViewExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D | 2 | | N-Glycosylation | Oligosaccharides Interaction |
Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | Ligand Interaction | ||
ACT Query on ACT | B | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | Ligand Interaction | ||
NH4 Query on NH4 | C | AMMONIUM ION H4 N QGZKDVFQNNGYKY-UHFFFAOYSA-O | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
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a = 68.82 | α = 90 |
b = 74.85 | β = 103.27 |
c = 81.28 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHENIX | phasing |