6Y8I

Fragment KCL_I013 in complex with IL-1-beta


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.238 
  • R-Value Observed: 0.240 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Fragment KCL_I013 in complex with IL-1-beta

De Nicola, G.F.Nichols, C.E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Interleukin-1 betaA153Homo sapiensMutation(s): 0 
Gene Names: IL1BIL1F2
UniProt & NIH Common Fund Data Resources
Find proteins for P01584 (Homo sapiens)
Explore P01584 
Go to UniProtKB:  P01584
PHAROS:  P01584
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OGE
Query on OGE

Download Ideal Coordinates CCD File 
C [auth A]1-(5-bromanylpyridin-2-yl)-3-(2-hydroxyethyl)urea
C8 H10 Br N3 O2
DWHYNYBZZGQFNY-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download Ideal Coordinates CCD File 
B [auth A]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.238 
  • R-Value Observed: 0.240 
  • Space Group: P 43
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.79α = 90
b = 54.79β = 90
c = 75.57γ = 90
Software Package:
Software NamePurpose
GDAdata collection
PHENIXrefinement
xia2data reduction
xia2data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
British Heart FoundationUnited KingdomSP/14/2/30922, FS/14/29/30896
Medical Research Council (MRC, United Kingdom)United KingdomMC_PC_17164

Revision History  (Full details and data files)

  • Version 1.0: 2020-06-17
    Type: Initial release