6Y80

Fragment KCL_916 in complex with MAP kinase p38-alpha


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.24 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.211 

wwPDB Validation 3D Report Full Report



Literature

Fragment KCL_916 in complex with MAP kinase p38-alpha

De Nicola, G.F.Nichols, C.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mitogen-activated protein kinase 14
A
360Mus musculusMutation(s): 1 
Gene Names: Mapk14Crk1Csbp1Csbp2
EC: 2.7.11.24
Find proteins for P47811 (Mus musculus)
Go to UniProtKB:  P47811
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SB4
Query on SB4

Download CCD File 
A
4-(4-FLUOROPHENYL)-1-(4-PIPERIDINYL)-5-(2-AMINO-4-PYRIMIDINYL)-IMIDAZOLE
C18 H19 F N6
VSPFURGQAYMVAN-UHFFFAOYSA-N
 Ligand Interaction
OFZ
Query on OFZ

Download CCD File 
A
1-(2-adamantylmethyl)-3-ethyl-guanidine
C14 H25 N3
GKPMCHKJTWWYLH-FOPUMGAHSA-N
 Ligand Interaction
SO4
Query on SO4

Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CA
Query on CA

Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.24 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.211 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.94α = 90
b = 102.344β = 90
c = 103.348γ = 90
Software Package:
Software NamePurpose
DIALSdata collection
PHENIXrefinement
DIALSdata reduction
DIALSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
British Heart FoundationUnited KingdomSP/14/2/30922, FS/14/29/30896
Medical Research Council (MRC, United Kingdom)United KingdomMC_PC_17164

Revision History 

  • Version 1.0: 2020-03-11
    Type: Initial release