6XY6

Structural insight into sheep-pox virus mediated inhibition of apoptosis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.241 

wwPDB Validation   3D Report Full Report


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Literature

Crystal structures of the sheeppox virus encoded inhibitor of apoptosis SPPV14 bound to the proapoptotic BH3 peptides Hrk and Bax.

Suraweera, C.D.Burton, D.R.Hinds, M.G.Kvansakul, M.

(2020) FEBS Lett 594: 2016-2026

  • DOI: https://doi.org/10.1002/1873-3468.13807
  • Primary Citation of Related Structures:  
    6XY4, 6XY6

  • PubMed Abstract: 

    Programmed death of infected cells is used by multicellular organisms to counter viral infections. Sheeppox virus encodes for SPPV14, a potent inhibitor of Bcl-2-mediated apoptosis. We reveal the structural basis of apoptosis inhibition by determining crystal structures of SPPV14 bound to BH3 motifs of proapoptotic Bax and Hrk. The structures show that SPPV14 engages BH3 peptides using the canonical ligand-binding groove. Unexpectedly, Arg84 from SPPV14 forms an ionic interaction with the conserved Asp in the BH3 motif in a manner that replaces the canonical ionic interaction seen in almost all host Bcl-2:BH3 motif complexes. These results reveal the flexibility of virus-encoded Bcl-2 proteins to mimic key interactions from endogenous host signalling pathways to retain BH3 binding and prosurvival functionality.


  • Organizational Affiliation

    Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Vic., Australia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
anti-apoptotic membrane protein
A, G
150Sheeppox virus (strain TU-V02127)Mutation(s): 0 
Gene Names: SPPV_14
UniProt
Find proteins for A0A3F2YKH3 (Sheeppox virus (strain Turkey/TU-V02127))
Explore A0A3F2YKH3 
Go to UniProtKB:  A0A3F2YKH3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A3F2YKH3
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Apoptosis regulator BAX
B, D, F, H, J
B, D, F, H, J, L, N, P
28Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q07812 (Homo sapiens)
Explore Q07812 
Go to UniProtKB:  Q07812
PHAROS:  Q07812
GTEx:  ENSG00000087088 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ07812
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
anti-apoptotic membrane protein
C, E, I, K, M
C, E, I, K, M, O
145Sheeppox virus (strain TU-V02127)Mutation(s): 0 
Gene Names: SPPV_14
UniProt
Find proteins for A0A3F2YKH3 (Sheeppox virus (strain Turkey/TU-V02127))
Explore A0A3F2YKH3 
Go to UniProtKB:  A0A3F2YKH3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A3F2YKH3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.241 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 100.279α = 90
b = 78.56β = 110.968
c = 107.766γ = 90
Software Package:
Software NamePurpose
Cootmodel building
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Australian Research Council (ARC)AustraliaFT130101349
National Health and Medical Research Council (NHMRC, Australia)AustraliaAPP1007918

Revision History  (Full details and data files)

  • Version 1.0: 2020-07-29
    Type: Initial release