6XLW

Crystal structure of U2AF65 bound to AdML splice site sequence


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.153 
  • R-Value Work: 0.131 
  • R-Value Observed: 0.132 

wwPDB Validation 3D Report Full Report



Literature

Crystal structure of U2AF65 bound to AdML splice site sequence

Maji, D.Jenkins, J.L.Kielkopf, C.L.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Splicing factor U2AF 65 kDa subunitA204Homo sapiensMutation(s): 0 
Gene Names: U2AF2U2AF65
Find proteins for P26368 (Homo sapiens)
Explore P26368 
Go to UniProtKB:  P26368
NIH Common Fund Data Resources
PHAROS  P26368
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA/RNA (5'-R(P*UP*UP*(UD)P*UP*U)-D(P*(BRU))-R(P*CP*C)-3')B8synthetic construct
    Small Molecules
    Ligands 3 Unique
    IDChainsName / Formula / InChI Key2D Diagram3D Interactions
    PEG
    Query on PEG

    Download CCD File 
    A
    DI(HYDROXYETHYL)ETHER
    C4 H10 O3
    MTHSVFCYNBDYFN-UHFFFAOYSA-N
     Ligand Interaction
    GOL
    Query on GOL

    Download CCD File 
    A
    GLYCEROL
    C3 H8 O3
    PEDCQBHIVMGVHV-UHFFFAOYSA-N
     Ligand Interaction
    NA
    Query on NA

    Download CCD File 
    A
    SODIUM ION
    Na
    FKNQFGJONOIPTF-UHFFFAOYSA-N
     Ligand Interaction
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 1.50 Å
    • R-Value Free: 0.153 
    • R-Value Work: 0.131 
    • R-Value Observed: 0.132 
    • Space Group: P 21 21 21
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 43.398α = 90
    b = 62.731β = 90
    c = 77.427γ = 90
    Software Package:
    Software NamePurpose
    PHENIXrefinement
    PDB_EXTRACTdata extraction
    XDSdata reduction
    Aimlessdata scaling
    PHENIXphasing

    Structure Validation

    View Full Validation Report



    Entry History & Funding Information

    Deposition Data


    Funding OrganizationLocationGrant Number
    National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM070503-15

    Revision History 

    • Version 1.0: 2020-10-07
      Type: Initial release