Download MendeleyThe structure of PfGH50B, an agarase from the marine bacterium Pseudoalteromonas fuliginea PS47
Pluvinage, B., Robb, C.S., Jeffries, R., Boraston, A.B.(2020) Acta Crystallogr F Struct Biol Commun 76: 422-427
6XJ9
Structure of PfGH50B
- PDB DOI: 10.2210/pdb6XJ9/pdb
- Classification: HYDROLASE
- Organism(s): Pseudoalteromonas fuliginea
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2020-06-23 Released: 2020-09-16
- Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.269
- R-Value Work: 0.224
- R-Value Observed: 0.227
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Agarase | A, B | 765 | Pseudoalteromonas fuliginea | Mutation(s): 0 Gene Names: EUZ79_06745, EU509_06755 |  |
UniProt | |||||
Find proteins for A0A833AJ49 (Pseudoalteromonas fuliginea) Explore A0A833AJ49 Go to UniProtKB: A0A833AJ49 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A833AJ49 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | C [auth A], D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.269
- R-Value Work: 0.224
- R-Value Observed: 0.227
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 73.24 | α = 90 |
| b = 76.26 | β = 90 |
| c = 269.86 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2020-06-23
- Released Date: 2020-09-16 Deposition Author(s): Pluvinage, B., Boraston, A.B.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Natural Sciences and Engineering Research Council (NSERC, Canada) | Canada | -- |
Revision History (Full details and data files)
- Version 1.0: 2020-09-16
Type: Initial release
