Download MendeleyPorcine pepsin in complex with ritonavir
Vuksanovic, N., Silvaggi, N.R.To be published.
6XCY
Porcine pepsin in complex with ritonavir
- PDB DOI: https://doi.org/10.2210/pdb6XCY/pdb
- Classification: HYDROLASE/INHIBITOR
- Organism(s): Sus scrofa
- Mutation(s): No
- Deposited: 2020-06-09 Released: 2021-06-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.235
- R-Value Work: 0.191
- R-Value Observed: 0.193
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Pepsin A | 326 | Sus scrofa | Mutation(s): 0 EC: 3.4.23.1 |  | |
UniProt | |||||
Find proteins for P00791 (Sus scrofa) Explore P00791 Go to UniProtKB: P00791 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00791 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| RIT (Subject of Investigation/LOI) Query on RIT | B [auth A] | RITONAVIR C37 H48 N6 O5 S2 NCDNCNXCDXHOMX-XGKFQTDJSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SEP Query on SEP | A | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_001001 (RIT) Query on PRD_001001 | B [auth A] | RITONAVIR | Peptide-like / Inhibitor | | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.235
- R-Value Work: 0.191
- R-Value Observed: 0.193
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 66.16 | α = 90 |
| b = 66.16 | β = 90 |
| c = 285.522 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2021-06-16 Deposition Author(s): Vuksanovic, N., Silvaggi, N.R.
Revision History (Full details and data files)
- Version 1.0: 2021-06-16
Type: Initial release - Version 1.1: 2021-08-18
Changes: Data collection, Database references - Version 1.2: 2023-10-18
Changes: Data collection, Refinement description
