6XB8

Adeno-Associated Virus Origin Binding Domain in complex with ssDNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.30 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.202 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Adeno-Associated Virus Origin Binding Domain in complex with ssDNA

Santosh, V.Musayev, F.N.Jaiswal, R.Vandewinkel, B.Zarate-Perez, F.Dierckx, C.Endicott, M.Sharifi, K.Dryden, K.Henckaerts, E.Escalante, C.R.

(2020) Nucleic Acids Res 


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Protein Rep68A, B, C, D206Adeno-associated virus 2 Srivastava/1982Mutation(s): 1 
Gene Names: Rep68
EC: 3.6.4.12
UniProt
Find proteins for P03132 (Adeno-associated virus 2 (isolate Srivastava/1982))
Explore P03132 
Go to UniProtKB:  P03132
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*GP*CP*TP*CP*TP*T)-3')E, F6synthetic construct
    Protein Feature View
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    • Reference Sequence
    Small Molecules
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 3.30 Å
    • R-Value Free: 0.218 
    • R-Value Work: 0.201 
    • R-Value Observed: 0.202 
    • Space Group: I 2 2 2
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 170.18α = 90
    b = 173.22β = 90
    c = 173.45γ = 90
    Software Package:
    Software NamePurpose
    PHENIXrefinement
    pointlessdata scaling
    PDB_EXTRACTdata extraction
    MOSFLMdata reduction
    PHENIXphasing

    Structure Validation

    View Full Validation Report



    Entry History & Funding Information

    Deposition Data


    Funding OrganizationLocationGrant Number
    National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM124204

    Revision History  (Full details and data files)

    • Version 1.0: 2020-12-09
      Type: Initial release