6X6G | pdb_00006x6g

Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with droperidol

PDB DOI: https://doi.org/10.2210/pdb6X6G/pdb

Classification: TRANSFERASE/TRANSFERASE Inhibitor
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2020-05-28 Released: 2021-06-02
Deposition Author(s): Punetha, A., Garneau-Tsodikova, S., Tsodikov, O.V.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.205 (Depositor), 0.210 (DCC)
R-Value Work:
0.173 (Depositor), 0.181 (DCC)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Structure-based design of haloperidol analogues as inhibitors of acetyltransferase Eis from Mycobacterium tuberculosis to overcome kanamycin resistance

Punetha, A., Green, K.D., Garzan, A., Willby, M.J., Pang, A.H., Hou, C., Holbrook, S.Y.L., Krieger, K., Posey, J.E., Parish, T., Tsodikov, O.V., Garneau-Tsodikova, S.

(2021) RSC Med Chem 12: 1894-1909

DOI: https://doi.org/10.1039/D1MD00239B

Macromolecule Content

Total Structure Weight: 47.1 kDa
Atom Count: 3,436
Modeled Residue Count: 392
Deposited Residue Count: 422
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
N-acetyltransferase Eis	A [auth AAA]	422	Mycobacterium tuberculosis H37Rv	Mutation(s): 1 Gene Names: eis, Rv2416c, MTCY253.04 EC: 2.3.1
UniProt
Find proteins for P9WFK7 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WFK7 Go to UniProtKB: P9WFK7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P9WFK7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
USS (Subject of Investigation/LOI) Query on USS Download:Ideal Coordinates CCD File SDF format, chain B [auth AAA] MOL2 format, chain B [auth AAA] mmCIF format, chain B [auth AAA]	B [auth AAA]	3-[1-[4-(4-fluorophenyl)-4-oxidanylidene-butyl]-2,3,4,5-tetrahydropyridin-4-yl]-1~{H}-benzimidazol-2-one C₂₂ H₂₂ F N₃ O₂ RMEDXOLNCUSCGS-UHFFFAOYSA-N		Interactions Focus chain B [auth AAA] Interactions & Density Focus chain B [auth AAA]
PEG Query on PEG Download:Ideal Coordinates CCD File SDF format, chain H [auth AAA] MOL2 format, chain H [auth AAA] mmCIF format, chain H [auth AAA]	H [auth AAA]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain H [auth AAA] Interactions & Density Focus chain H [auth AAA]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain J [auth AAA] SDF format, chain I [auth AAA] SDF format, chain G [auth AAA] SDF format, chain D [auth AAA] SDF format, chain C [auth AAA] MOL2 format, chain J [auth AAA] MOL2 format, chain I [auth AAA] MOL2 format, chain G [auth AAA] MOL2 format, chain D [auth AAA] MOL2 format, chain C [auth AAA] mmCIF format, chain J [auth AAA] mmCIF format, chain I [auth AAA] mmCIF format, chain G [auth AAA] mmCIF format, chain D [auth AAA] mmCIF format, chain C [auth AAA]	C [auth AAA], D [auth AAA], G [auth AAA], I [auth AAA], J [auth AAA]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain C [auth AAA] Focus chain D [auth AAA] Focus chain G [auth AAA] Focus chain I [auth AAA] Focus chain J [auth AAA] Interactions & Density Focus chain C [auth AAA] Focus chain D [auth AAA] Focus chain G [auth AAA] Focus chain I [auth AAA] Focus chain J [auth AAA]
DMS Query on DMS Download:Ideal Coordinates CCD File SDF format, chain F [auth AAA] SDF format, chain E [auth AAA] MOL2 format, chain F [auth AAA] MOL2 format, chain E [auth AAA] mmCIF format, chain F [auth AAA] mmCIF format, chain E [auth AAA]	E [auth AAA], F [auth AAA]	DIMETHYL SULFOXIDE C₂ H₆ O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N		Interactions Focus chain E [auth AAA] Focus chain F [auth AAA] Interactions & Density Focus chain E [auth AAA] Focus chain F [auth AAA]