6X60 | pdb_00006x60

ClpP2 from Chlamydia trachomatis with resolved handle loop

PDB DOI: https://doi.org/10.2210/pdb6X60/pdb

Classification: HYDROLASE
Organism(s): Chlamydia trachomatis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-05-27 Released: 2020-06-03
Deposition Author(s): Azadmanesh, J., Struble, L.R., Seleem, M.A., Ouellette, S., Conda-Sheridan, M., Borgstahl, G.E.O.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Department of Defense (DOD, United States), National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.81 Å
R-Value Free:
0.235 (Depositor), 0.235 (DCC)
R-Value Work:
0.198 (Depositor), 0.199 (DCC)
R-Value Observed:
0.200 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6X60

This is version 1.1 of the entry. See complete history.

Literature

ClpP2 from Chlamydia trachomatis with resolved handle loop

Azadmanesh, J., Struble, L.R., Borgstahl, G.E.O., Ouellette, S., Conda-Sheridan, M.

To be published.

Macromolecule Content

Total Structure Weight: 154.5 kDa
Atom Count: 10,106
Modeled Residue Count: 1,328
Deposited Residue Count: 1,421
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-dependent Clp protease proteolytic subunit 2	A, B, C, D, E A, B, C, D, E, F, G	203	Chlamydia trachomatis	Mutation(s): 0 Gene Names: clpP2 EC: 3.4.21.92
UniProt
Find proteins for O84712 (Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)) Explore O84712 Go to UniProtKB: O84712
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O84712
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.81 Å
R-Value Free: 0.235 (Depositor), 0.235 (DCC)
R-Value Work: 0.198 (Depositor), 0.199 (DCC)
R-Value Observed: 0.200 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 129.71	α = 90
b = 147.043	β = 128.25
c = 97.059	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
PDB_EXTRACT	data extraction
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-06-03

Deposition Author(s):

Conda-Sheridan, M.

Borgstahl, G.E.O.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	1P20GM121316-01A1
Department of Defense (DOD, United States)	United States	PRMRP#PR172445
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	5P30CA036727-33

Revision History (Full details and data files)

Version 1.0: 2020-06-03
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.