6X5M

Crystal structure of a stabilized PAN ENE bimolecular triplex with a GC-clamped polyA tail


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.209 

wwPDB Validation 3D Report Full Report



Literature

Targeting the Nuclear Expression Element (ENE) Triple Helix of Kaposi Sarcoma Herpesvirus Polyadenylated Nuclear RNA, PAN.

Swain, M.Li, M.Ageeli, A.Kasprzak, W.Miller, J.T.Sztuba-Solinska, J.Kenderdine, T.Fraboni, A.Schneekloth, J.Piccirrili, J.Murelli, R.P.Fabris, D.Wlodawer, A.Shapiro, B.Baird, N.Le Grice, S.F.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Light chain Fab BL-3 6
L, l
215Mus musculusMutation(s): 0 
Protein Feature View
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Heavy chain Fab Bl-3 6
H, h
225Mus musculusMutation(s): 0 
Protein Feature View
  • Reference Sequence

Find similar nucleic acids by: Sequence   |  Structure

Entity ID: 3
MoleculeChainsLengthOrganism
ggPAN RNA (39-MER)R, r78synthetic construct
  • Find similar nucleic acids by: Sequence   |   Structure
Entity ID: 4
MoleculeChainsLengthOrganism
ggcA9 RNA (12-MER)A, a12synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download CCD File 
L, l
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.209 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.128α = 71.899
b = 76.26β = 88.591
c = 110.664γ = 86.579
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United States--

Revision History 

  • Version 1.0: 2020-06-24
    Type: Initial release