6WUS | pdb_00006wus

Crystal structure of PRL-1 phosphatase C104D mutant in complex with the Bateman domain of CNNM2 magnesium transporter

PDB DOI: https://doi.org/10.2210/pdb6WUS/pdb

Classification: METAL TRANSPORT/HYDROLASE
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2020-05-05 Released: 2020-07-01
Deposition Author(s): Kozlov, G., Gehring, K.
Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.76 Å
R-Value Free:
0.281 (Depositor), 0.293 (DCC)
R-Value Work:
0.240 (Depositor)
R-Value Observed:
0.243 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of PRL phosphatase C104D mutant in complex with the Bateman domain of CNNM magnesium transporter

Kozlov, G., Funato, Y., Chen, S., Zhang, Z., Illes, K., Miki, H., Gehring, K.

(2020) J Biological Chem

Macromolecule Content

Total Structure Weight: 36.22 kDa
Atom Count: 2,315
Modeled Residue Count: 301
Deposited Residue Count: 317
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Metal transporter CNNM2	A	153	Mus musculus	Mutation(s): 0 Gene Names: Cnnm2, Acdp2
UniProt & NIH Common Fund Data Resources
Find proteins for Q3TWN3 (Mus musculus) Explore Q3TWN3 Go to UniProtKB: Q3TWN3
IMPC: MGI:2151054
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q3TWN3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein tyrosine phosphatase type IVA 1	B	164	Mus musculus	Mutation(s): 1 Gene Names: Ptp4a1, Prl1 EC: 3.1.3.48
UniProt & NIH Common Fund Data Resources
Find proteins for Q63739 (Mus musculus) Explore Q63739 Go to UniProtKB: Q63739
IMPC: MGI:1277096
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q63739
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.76 Å
R-Value Free: 0.281 (Depositor), 0.293 (DCC)
R-Value Work: 0.240 (Depositor)
R-Value Observed: 0.243 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.138	α = 90
b = 127.935	β = 90
c = 152.158	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-07-01

Deposition Author(s):

Funding Organization	Location	Grant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)	Canada	RPGIN2014-04686

Revision History (Full details and data files)

Version 1.0: 2020-07-01
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.