Download MendeleyCrystal structure of VipF from Legionella hackeliae in complex with acetyl-CoA
Stogios, P.J.To be published.
6WQB
Crystal structure of VipF from Legionella hackeliae in complex with acetyl-CoA
- PDB DOI: https://doi.org/10.2210/pdb6WQB/pdb
- Classification: TRANSFERASE
- Organism(s): Legionella hackeliae
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2020-04-28 Released: 2021-11-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.214
- R-Value Work: 0.184
- R-Value Observed: 0.185
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| N-terminal acetyltransferase, GNAT family | 293 | Legionella hackeliae | Mutation(s): 0 Gene Names: vipF, LHA_0223 |  | |
UniProt | |||||
Find proteins for A0A0A8UKD4 (Legionella hackeliae) Explore A0A0A8UKD4 Go to UniProtKB: A0A0A8UKD4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0A8UKD4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACO (Subject of Investigation/LOI) Query on ACO | B [auth A], C [auth A] | ACETYL COENZYME *A C23 H38 N7 O17 P3 S ZSLZBFCDCINBPY-ZSJPKINUSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.214
- R-Value Work: 0.184
- R-Value Observed: 0.185
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 170.586 | α = 90 |
| b = 36.427 | β = 90 |
| c = 59.343 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHENIX | phasing |
| PHENIX | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2021-11-10 Deposition Author(s): Stogios, P.J., Skarina, T., Wawrzak, Z., Sandoval, J., Di Leo, R., Savchenko, A.
Revision History (Full details and data files)
- Version 1.0: 2021-11-10
Type: Initial release - Version 1.1: 2023-10-18
Changes: Data collection, Refinement description
