Download MendeleyCrystal structure of RNA-binding domain of nucleocapsid phosphoprotein from SARS CoV-2, monoclinic crystal form
Chang, C., Michalska, K., Jedrzejczak, R., Maltseva, N., Endres, M., Godzik, A., Kim, Y., Joachimiak, A.To be published.
6WKP
Crystal structure of RNA-binding domain of nucleocapsid phosphoprotein from SARS CoV-2, monoclinic crystal form
- PDB DOI: 10.2210/pdb6WKP/pdb
- Classification: VIRAL PROTEIN, RNA BINDING PROTEIN
- Organism(s): Severe acute respiratory syndrome coronavirus 2
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2020-04-16 Released: 2020-04-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.67 Å
- R-Value Free: 0.248
- R-Value Work: 0.197
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nucleoprotein | A, B, C, D | 128 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0 Gene Names: N |  |
UniProt | |||||
Find proteins for P0DTC9 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC9 Go to UniProtKB: P0DTC9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0DTC9 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MES Query on MES | F [auth B], I [auth D] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N |  | Ligand Interaction | |
| ZN Query on ZN | E [auth A], G [auth B], H [auth C], J [auth D] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.67 Å
- R-Value Free: 0.248
- R-Value Work: 0.197
- R-Value Observed: 0.200
- Space Group: P 1 21 1
- Diffraction Data DOI: 10.18430/m36wkp Protein Diffraction
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 33.388 | α = 90 |
| b = 71.848 | β = 92.98 |
| c = 106.961 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| SBC-Collect | data collection |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2020-04-29 Deposition Author(s): Chang, C., Michalska, K., Jedrzejczak, R., Maltseva, N., Endres, M., Godzik, A., Kim, Y., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2020-04-29
Type: Initial release - Version 1.1: 2020-05-06
Changes: Database references, Source and taxonomy, Structure summary - Version 1.2: 2021-01-27
Changes: Derived calculations, Structure summary
