Download Mendeley2.05 Angstrom Resolution Crystal Structure of C-terminal Dimerization Domain of Nucleocapsid Phosphoprotein from SARS-CoV-2
Minasov, G., Shuvalova, L., Wiersum, G., Satchell, K.J.F.To be published.
6WJI
2.05 Angstrom Resolution Crystal Structure of C-terminal Dimerization Domain of Nucleocapsid Phosphoprotein from SARS-CoV-2
- PDB DOI: https://doi.org/10.2210/pdb6WJI/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Severe acute respiratory syndrome coronavirus 2
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2020-04-13 Released: 2020-04-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.228
- R-Value Work: 0.187
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nucleoprotein | 121 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0 Gene Names: N |  | |
UniProt | |||||
Find proteins for P0DTC9 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC9 Go to UniProtKB: P0DTC9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0DTC9 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | G [auth A], H [auth B], I [auth C], J [auth D], K [auth D], | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.228
- R-Value Work: 0.187
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/m36wji
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 43.612 | α = 90 |
| b = 122.317 | β = 90 |
| c = 130.633 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2020-04-22 Deposition Author(s): Minasov, G., Shuvalova, L., Wiersum, G., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2020-04-22
Type: Initial release - Version 1.1: 2020-05-06
Changes: Database references, Source and taxonomy, Structure summary - Version 1.2: 2021-01-27
Changes: Structure summary
