6WIF

Class C beta-lactamase from Acinetobacter baumannii in complex with 4-(Ethyl(methyl)carbamoyl)phenyl boronic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.195 

wwPDB Validation 3D Report Full Report



Literature

class C beta-lactamase from Acinetobacter baumannii in complex with 4-(Ethyl(methyl)carbamoyl)phenyl boronic acid

Chang, C.Maltseva, N.Endres, M.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A, B, C, D
360Acinetobacter baumanniiMutation(s): 0 
Gene Names: ampCA7M79_07980A7M90_05015BGC29_02775E5294_06010FJU36_01670LV38_01949
EC: 3.5.2.6
Find proteins for D6NSN2 (Acinetobacter baumannii)
Go to UniProtKB:  D6NSN2
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EPE
Query on EPE

Download CCD File 
B, C, D
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
 Ligand Interaction
U2Y
Query on U2Y

Download CCD File 
A, B, C, D
{4-[ethyl(methyl)carbamoyl]phenyl}boronic acid
C10 H14 B N O3
AWXVNEUNYSIXAD-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download CCD File 
B, C, D
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download CCD File 
A, C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.195 
  • Space Group: P 1 21 1
  • Diffraction Data DOI: 6WIF Protein Diffraction
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 93.244α = 90
b = 80.925β = 113.34
c = 104.377γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
SBC-Collectdata collection
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000phasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-04-22
    Type: Initial release