The crystal structure of a collagen galactosylhydroxylysyl glucosyltransferase from human
Guo, H.-F., Tsai, C.-L., Miller, M.D., Phillips Jr., G.N., Tainer, J.A., Kurie, J.M.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 | 247 | Homo sapiens | Mutation(s): 0  Gene Names: PLOD3 EC: 1.14.11.4 (PDB Primary Data), 2.4.1.50 (PDB Primary Data), 2.4.1.66 (PDB Primary Data) | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60568 (Homo sapiens) Explore O60568  Go to UniProtKB:  O60568 | |||||
PHAROS:  O60568 GTEx:  ENSG00000106397  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60568 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
UDP (Subject of Investigation/LOI) Query on UDP | E [auth A] | URIDINE-5'-DIPHOSPHATE C9 H14 N2 O12 P2 XCCTYIAWTASOJW-XVFCMESISA-N | |||
TRS Query on TRS | F [auth A] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O | |||
MN (Subject of Investigation/LOI) Query on MN | B [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
MG (Subject of Investigation/LOI) Query on MG | C [auth A], D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 71.066 | α = 90 |
b = 71.066 | β = 90 |
c = 110.813 | γ = 120 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
SHELXD | phasing |
SOLVE | phasing |
RESOLVE | model building |
SHELXE | model building |
Coot | model building |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | R01CA105155 |
National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | K99CA225633 |
Cancer Prevention and Research Institute of Texas (CPRIT) | United States | RP160652 |