6W9W | pdb_00006w9w

R80A PCNA mutant defective in BIR

PDB DOI: https://doi.org/10.2210/pdb6W9W/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2020-03-23 Released: 2020-09-23
Deposition Author(s): Ripley, B.M., Washington, M.T.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free:
0.243 (Depositor), 0.251 (DCC)
R-Value Work:
0.214 (Depositor), 0.223 (DCC)
R-Value Observed:
0.216 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 6W9W

This is version 1.1 of the entry. See complete history.

Literature

Structural analysis of PCNA mutant proteins defective in BIR, FF248-249AA and R80A

Ripley, B.M., Washington, M.T.

To be published.

Macromolecule Content

Total Structure Weight: 28.65 kDa
Atom Count: 2,010
Modeled Residue Count: 256
Deposited Residue Count: 256
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Proliferating cell nuclear antigen	A	256	Saccharomyces cerevisiae	Mutation(s): 1 Gene Names: POL30, YBR088C, YBR0811
UniProt
Find proteins for P15873 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P15873 Go to UniProtKB: P15873
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P15873
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free: 0.243 (Depositor), 0.251 (DCC)
R-Value Work: 0.214 (Depositor), 0.223 (DCC)
R-Value Observed: 0.216 (Depositor)

Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 122.078	α = 90
b = 122.078	β = 90
c = 122.078	γ = 90

Software Package:

Software Name	Purpose
Coot	refinement
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
Blu-Ice	data extraction
pointless	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-09-23

Deposition Author(s):

Washington, M.T.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	5R01GM081433-09

Revision History (Full details and data files)

Version 1.0: 2020-09-23
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.