6W9W | pdb_00006w9w

R80A PCNA mutant defective in BIR

PDB DOI: https://doi.org/10.2210/pdb6W9W/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2020-03-23 Released: 2020-09-23
Deposition Author(s): Ripley, B.M., Washington, M.T.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free:
0.243 (Depositor), 0.250 (DCC)
R-Value Work:
0.214 (Depositor), 0.230 (DCC)
R-Value Observed:
0.216 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural analysis of PCNA mutant proteins defective in BIR, FF248-249AA and R80A

Ripley, B.M., Washington, M.T.

To be published.

Macromolecule Content

Total Structure Weight: 28.65 kDa
Atom Count: 2,010
Modeled Residue Count: 256
Deposited Residue Count: 256
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Proliferating cell nuclear antigen	A	256	Saccharomyces cerevisiae	Mutation(s): 1 Gene Names: POL30, YBR088C, YBR0811
UniProt
Find proteins for P15873 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P15873 Go to UniProtKB: P15873
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P15873
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free: 0.243 (Depositor), 0.250 (DCC)
R-Value Work: 0.214 (Depositor), 0.230 (DCC)
R-Value Observed: 0.216 (Depositor)

Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 122.078	α = 90
b = 122.078	β = 90
c = 122.078	γ = 90

Software Package:

Software Name	Purpose
Coot	refinement
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
Blu-Ice	data extraction
pointless	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-09-23

Deposition Author(s):

Washington, M.T.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	5R01GM081433-09

Revision History (Full details and data files)

Version 1.0: 2020-09-23
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.