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Lockbaum, G.J., Henes, M., Kosovrasti, K., Nalivaika, E.A., Ali, A., KurtYilmaz, N., Schiffer, C.A.To be published.
6W6S
WT HTLV-1 Protease in Complex with Phosphonated UMass6 (PU6)
- PDB DOI: https://doi.org/10.2210/pdb6W6S/pdb
- Classification: HYDROLASE/HYDROLASE INHIBITOR
- Organism(s): Human T-cell leukemia virus type I
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2020-03-17 Released: 2021-03-17
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.29 Å
- R-Value Free: 0.306
- R-Value Work: 0.266
- R-Value Observed: 0.268
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HTLV-1 Protease | A [auth B], B [auth A] | 116 | Human T-cell leukemia virus type I | Mutation(s): 0 Gene Names: pro EC: 3.4.23 |  |
UniProt | |||||
Find proteins for P10274 (Human T-cell leukemia virus 1 (strain Japan ATK-1 subtype A)) Explore P10274 Go to UniProtKB: P10274 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P10274 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TK7 (Subject of Investigation/LOI) Query on TK7 | C [auth A] | diethyl [(4-{(2S,3R)-4-{[(4-aminophenyl)sulfonyl](2-ethylbutyl)amino}-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxybutyl}phenoxy)methyl]phosphonate C34 H52 N3 O11 P S BEYLPLHLWVCWJA-NKVOBILMSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.29 Å
- R-Value Free: 0.306
- R-Value Work: 0.266
- R-Value Observed: 0.268
- Space Group: P 63 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.566 | α = 90 |
| b = 76.566 | β = 90 |
| c = 157.285 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| PHASER | phasing |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-03-17 Deposition Author(s): Lockbaum, G.J., Henes, M., Kosovrasti, K., Nalivaika, E.A., Ali, A., KurtYilmaz, N., Schiffer, C.A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | P01-GM109767 |
Revision History (Full details and data files)
- Version 1.0: 2021-03-17
Type: Initial release
