HIV Integrase core domain in complex with inhibitor (5-methyl-1-benzofuran-3-yl)acetic acid
Gorman, M.A., Parker, M.W.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
HIV Integrase catalytic domain | 165 | Human immunodeficiency virus 1 | Mutation(s): 0  EC: 2.7.7.49 | ||
UniProt | |||||
Find proteins for P12497 (Human immunodeficiency virus type 1 group M subtype B (isolate NY5)) Explore P12497  Go to UniProtKB:  P12497 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12497 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SJY (Subject of Investigation/LOI) Query on SJY | H [auth A] | 2-[5-methyl-2-(2-thiophen-2-ylethynyl)-1-benzofuran-3-yl]ethanoic acid C17 H12 O3 S IEIHBCBAJNGRHJ-UHFFFAOYSA-N | |||
IOD Query on IOD | D [auth A], E [auth A], F [auth A], G [auth A] | IODIDE ION I XMBWDFGMSWQBCA-UHFFFAOYSA-M | |||
SO4 Query on SO4 | B [auth A], C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 46.18 | α = 90 |
b = 46.18 | β = 90 |
c = 139.43 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
Aimless | data reduction |
Aimless | data scaling |
REFMAC | phasing |