6VVO

Structure of the human clamp loader (Replication Factor C, RFC) bound to the sliding clamp (Proliferating Cell Nuclear Antigen, PCNA)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of the human clamp loader bound to the sliding clamp: a further twist on AAA+ mechanism

Gaubitz, C.Liu, X.Magrino, J.Stone, N.P.Landeck, J.Hedglin, M.Kelch, B.A.

(2020) Biorxiv 


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Replication factor C subunit 1
A
595Homo sapiensMutation(s): 0 
Gene Names: RFC1RFC140
Find proteins for P35251 (Homo sapiens)
Go to UniProtKB:  P35251
NIH Common Fund Data Resources
PHAROS  P35251

Find similar proteins by: Sequence  |  Structure

Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
Proliferating cell nuclear antigen
F, G, H
261Homo sapiensMutation(s): 0 
Gene Names: PCNA
Find proteins for P12004 (Homo sapiens)
Go to UniProtKB:  P12004
NIH Common Fund Data Resources
PHAROS  P12004

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Replication factor C subunit 2
B
354Homo sapiensMutation(s): 0 
Gene Names: RFC2
Find proteins for P35250 (Homo sapiens)
Go to UniProtKB:  P35250
NIH Common Fund Data Resources
PHAROS  P35250

Find similar proteins by: Sequence  |  Structure

Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Replication factor C subunit 5
C
340Homo sapiensMutation(s): 0 
Gene Names: RFC5
Find proteins for P40937 (Homo sapiens)
Go to UniProtKB:  P40937
NIH Common Fund Data Resources
PHAROS  P40937

Find similar proteins by: Sequence  |  Structure

Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Replication factor C subunit 4
D
363Homo sapiensMutation(s): 0 
Gene Names: RFC4
Find proteins for P35249 (Homo sapiens)
Go to UniProtKB:  P35249
NIH Common Fund Data Resources
PHAROS  P35249

Find similar proteins by: Sequence  |  Structure

Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Replication factor C subunit 3
E
356Homo sapiensMutation(s): 0 
Gene Names: RFC3
Find proteins for P40938 (Homo sapiens)
Go to UniProtKB:  P40938
NIH Common Fund Data Resources
PHAROS  P40938
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AGS
Query on AGS

Download CCD File 
A, B, C, D
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
C10 H16 N5 O12 P3 S
NLTUCYMLOPLUHL-KQYNXXCUSA-N
 Ligand Interaction
ADP
Query on ADP

Download CCD File 
E
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download CCD File 
A, B, C, D
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
American Cancer SocietyUnited States440685
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01-GM127776
Swiss National Science FoundationSwitzerland177859

Revision History 

  • Version 1.0: 2020-02-26
    Type: Initial release
  • Version 1.1: 2020-03-25
    Changes: Data collection, Refinement description