6VOQ

Crystal structure of YgbL, a putative aldolase/epimerase/decarboxylase from Klebsiella pneumoniae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.156 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of YgbL, a putative aldolase/epimerase/decarboxylase from Klebsiella pneumoniae

Stogios, P.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Aldolase
A
207Klebsiella pneumoniaeMutation(s): 0 
Gene Names: fucA_3 (fucA_1, fucA_2)
EC: 4.1.2.17
Find proteins for Q0QC76 (Klebsiella pneumoniae)
Go to UniProtKB:  Q0QC76
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.156 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 76.436α = 90.00
b = 76.436β = 90.00
c = 181.682γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
HKL-3000data reduction
Cootmodel building
PHENIXmodel building
PHENIXrefinement
BALBESphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesHHSN272201700060C

Revision History 

  • Version 1.0: 2020-02-19
    Type: Initial release