6VM8

SILv44 T cell receptor bound to HLA-A2 presenting gp100T2M peptide (IMDQVPFSV)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.41 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.189 

wwPDB Validation   3D Report Full Report



Literature

SILv44 T cell receptor bound to HLA-A2 presenting gp100T2M peptide (IMDQVPFSV)

Smith, A.R.Baker, B.M.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
MHC class I antigen, A-2 alpha chainA275Homo sapiensMutation(s): 0 
Gene Names: HLA-A
Find proteins for A0A5B8RNS7 (Homo sapiens)
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Go to UniProtKB:  A0A5B8RNS7
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
SILv44 T cell receptor beta chainE243Homo sapiensMutation(s): 0 
Gene Names: TRBV19TRBC2
Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
SILv44 T cell receptor alpha chainD208Homo sapiensMutation(s): 0 
Gene Names: TRAV8-1TRAC
Protein Feature View
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  • Reference Sequence
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-2-microglobulinB100Homo sapiensMutation(s): 0 
Gene Names: B2MCDABP0092HDCMA22P
Find proteins for P61769 (Homo sapiens)
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Go to UniProtKB:  P61769
NIH Common Fund Data Resources
PHAROS  P61769
Protein Feature View
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  • Reference Sequence
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Melanocyte protein PMELC9Homo sapiensMutation(s): 1 
Gene Names: PMELD12S53EPMEL17SILV
Find proteins for P40967 (Homo sapiens)
Explore P40967 
Go to UniProtKB:  P40967
NIH Common Fund Data Resources
PHAROS  P40967
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FLC
Query on FLC

Download Ideal Coordinates CCD File 
D
CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.41 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.189 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 68.269α = 90
b = 94.445β = 90
c = 143.824γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
MoRDaphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)--

Revision History 

  • Version 1.0: 2020-11-25
    Type: Initial release