6VJ2 | pdb_00006vj2

3.10 Angstrom Resolution Crystal Structure of Foldase Protein (PrsA) from Lactococcus lactis

PDB DOI: https://doi.org/10.2210/pdb6VJ2/pdb

Classification: ISOMERASE
Organism(s): Lactococcus lactis subsp. lactis Il1403
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-01-14 Released: 2020-02-05
Deposition Author(s): Minasov, G., Shuvalova, L., Kiryukhina, O., Endres, M., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free:
0.290 (Depositor), 0.293 (DCC)
R-Value Work:
0.234 (Depositor), 0.236 (DCC)
R-Value Observed:
0.236 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

3.10 Angstrom Resolution Crystal Structure of Foldase Protein (PrsA) from Lactococcus lactis

Minasov, G., Shuvalova, L., Kiryukhina, O., Endres, M., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecule Content

Total Structure Weight: 126.54 kDa
Atom Count: 8,570
Modeled Residue Count: 1,080
Deposited Residue Count: 1,136
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Foldase	A, B, C, D	284	Lactococcus lactis subsp. lactis Il1403	Mutation(s): 0 Gene Names: prsA, pmpA, LL1725, L164604 EC: 5.2.1.8
UniProt
Find proteins for Q9CEV9 (Lactococcus lactis subsp. lactis (strain IL1403)) Explore Q9CEV9 Go to UniProtKB: Q9CEV9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CEV9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.290 (Depositor), 0.293 (DCC)
R-Value Work: 0.234 (Depositor), 0.236 (DCC)
R-Value Observed: 0.236 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.513	α = 90
b = 117.609	β = 90
c = 149.31	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2020-02-05

Deposition Author(s):

Satchell, K.J.F.

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History (Full details and data files)

Version 1.0: 2020-02-05
Type: Initial release
Version 1.1: 2024-10-16
Changes: Data collection, Database references, Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.