6VFY | pdb_00006vfy

Crystal structure of mouse acyl-CoA thioesterase 7 with CoA

PDB DOI: https://doi.org/10.2210/pdb6VFY/pdb

Classification: HYDROLASE
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-01-06 Released: 2020-01-29
Deposition Author(s): Teakel, S.L., Forwood, J.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.268 (Depositor)
R-Value Work:
0.231 (Depositor)
R-Value Observed:
0.233 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of mouse acyl-CoA thioesterase 7 with CoA

Teakel, S.L., Forwood, J.K.

To be published.

Macromolecule Content

Total Structure Weight: 115.44 kDa
Atom Count: 6,718
Modeled Residue Count: 910
Deposited Residue Count: 1,014
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytosolic acyl coenzyme A thioester hydrolase	A [auth D], B [auth E], C [auth F]	338	Mus musculus	Mutation(s): 0 Gene Names: Acot7, Bach EC: 3.1.2.2
UniProt
Find proteins for Q91V12 (Mus musculus) Explore Q91V12 Go to UniProtKB: Q91V12
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q91V12
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
COA (Subject of Investigation/LOI) Query on COA Download Ideal Coordinates CCD File SDF format, chain F SDF format, chain E SDF format, chain D MOL2 format, chain F MOL2 format, chain E MOL2 format, chain D mmCIF format, chain F mmCIF format, chain E mmCIF format, chain D	D, E, F	COENZYME A C₂₁ H₃₆ N₇ O₁₆ P₃ S RGJOEKWQDUBAIZ-IBOSZNHHSA-N		Interactions Focus chain D Focus chain E Focus chain F
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain G [auth F] MOL2 format, chain G [auth F] mmCIF format, chain G [auth F]	G [auth F]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain G [auth F]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.268 (Depositor)
R-Value Work: 0.231 (Depositor)
R-Value Observed: 0.233 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.156	α = 90
b = 135.331	β = 100.57
c = 70.126	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data reduction
Aimless	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2020-01-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-01-29
Type: Initial release
Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.