6VDB

SETD2 in complex with a H3-variant peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

SETD2 in complex with a H3-variant peptide

Beldar, S.Tempel, W.Arrowsmith, C.H.Bountra, C.Edwards, A.M.Jeltsch, A.Min, J.Structural Genomics Consortium

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histone-lysine N-methyltransferase SETD2
A
295Homo sapiensMutation(s): 0 
Gene Names: SETD2 (HIF1, HYPB, KIAA1732, KMT3A, SET2)
EC: 2.1.1.-
Find proteins for Q9BYW2 (Homo sapiens)
Go to Gene View: SETD2
Go to UniProtKB:  Q9BYW2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ALA-PRO-ARG-PHE-GLY-GLY-VAL-MET-ARG-PRO-ASN-ARG
H
14N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SCN
Query on SCN

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Download CCD File 
H
THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
 Ligand Interaction
UNX
Query on UNX

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Download CCD File 
A, H
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
SAH
Query on SAH

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Download CCD File 
A
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 60.370α = 90.00
b = 76.520β = 90.00
c = 77.610γ = 90.00
Software Package:
Software NamePurpose
REFMACphasing
Aimlessdata scaling
BUSTERrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-01-29
    Type: Initial release