Download MendeleyThe crystal structure of the 2009 H1N1 PA endonuclease mutant I38T in complex with SJ000985494
Cuypers, M.G., Slavish, P.J., Rankovic, Z., White, S.W.To be published.
6V56
The crystal structure of the 2009 H1N1 PA endonuclease wild type in complex with SJ000985494
- PDB DOI: https://doi.org/10.2210/pdb6V56/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Influenza A virus (A/Luxembourg/43/2009(H1N1))
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-12-03 Released: 2021-02-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.75 Å
- R-Value Free: 0.262
- R-Value Work: 0.244
- R-Value Observed: 0.245
wwPDB Validation 3D Report Full Report
Currently 6V56 does not have a validation slider image.
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polymerase acidic protein,Polymerase acidic protein | 197 | Influenza A virus (A/Luxembourg/43/2009(H1N1)) | Mutation(s): 0 Gene Names: PA |  | |
UniProt | |||||
Find proteins for C6H0Y9 (Influenza A virus) Explore C6H0Y9 Go to UniProtKB: C6H0Y9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C6H0Y9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| QQ4 Query on QQ4 | C [auth A] | Hexa Vinylpyrrolidone K15 C36 H56 N6 O6 OFPQNVWJHZVWCZ-CMPUJJQDSA-N |  | ||
| QPY (Subject of Investigation/LOI) Query on QPY | B [auth A] | benzyl (2S)-2-(4-{[2-(6-amino-9H-purin-9-yl)ethyl]carbamoyl}-5-hydroxy-6-oxo-1,6-dihydropyrimidin-2-yl)pyrrolidine-1-carboxylate C24 H25 N9 O5 GEKIERMMQOYZBF-HNNXBMFYSA-N |  | ||
| SO4 Query on SO4 | F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| MN Query on MN | D [auth A], E [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.75 Å
- R-Value Free: 0.262
- R-Value Work: 0.244
- R-Value Observed: 0.245
- Space Group: I 4 2 2
- Diffraction Data: https://doi.org/10.18430/m36v56
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 89.546 | α = 90 |
| b = 89.546 | β = 90 |
| c = 132.78 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| Aimless | data scaling |
| MOLREP | phasing |
Structure Validation
Currently 6V56 does not have a validation slider image.
Entry History
Deposition Data
- Released Date: 2021-02-10 Deposition Author(s): Cuypers, M.G., Slavish, P.J., Rankovic, Z., White, S.W.
Revision History (Full details and data files)
- Version 1.0: 2021-02-10
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description
