6V3P

The BIgI domain of beta protein from S. agalactiae bound to CEACAM1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.218 
  • R-Value Observed: 0.219 

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This is version 1.2 of the entry. See complete history


Literature

Bacterial protein domains with a novel Ig-like fold target human CEACAM receptors.

van Sorge, N.M.Bonsor, D.A.Deng, L.Lindahl, E.Schmitt, V.Lyndin, M.Schmidt, A.Nilsson, O.R.Brizuela, J.Boero, E.Sundberg, E.J.van Strijp, J.A.G.Doran, K.S.Singer, B.B.Lindahl, G.McCarthy, A.J.

(2021) EMBO J 40: e106103-e106103

  • DOI: https://doi.org/10.15252/embj.2020106103
  • Primary Citation of Related Structures:  
    6V3P

  • PubMed Abstract: 

    Streptococcus agalactiae, also known as group B Streptococcus (GBS), is the major cause of neonatal sepsis in humans. A critical step to infection is adhesion of bacteria to epithelial surfaces. GBS adhesins have been identified to bind extracellular matrix components and cellular receptors. However, several putative adhesins have no host binding partner characterised. We report here that surface-expressed β protein of GBS binds to human CEACAM1 and CEACAM5 receptors. A crystal structure of the complex showed that an IgSF domain in β represents a novel Ig-fold subtype called IgI3, in which unique features allow binding to CEACAM1. Bioinformatic assessment revealed that this newly identified IgI3 fold is not exclusively present in GBS but is predicted to be present in adhesins from other clinically important human pathogens. In agreement with this prediction, we found that CEACAM1 binds to an IgI3 domain found in an adhesin from a different streptococcal species. Overall, our results indicate that the IgI3 fold could provide a broadly applied mechanism for bacteria to target CEACAMs.


  • Organizational Affiliation

    Department of Medical Microbiology, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Carcinoembryonic antigen-related cell adhesion molecule 1
A, B
109Homo sapiensMutation(s): 0 
Gene Names: CEACAM1BGPBGP1
UniProt & NIH Common Fund Data Resources
Find proteins for P13688 (Homo sapiens)
Explore P13688 
Go to UniProtKB:  P13688
PHAROS:  P13688
GTEx:  ENSG00000079385 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP13688
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
IgA FC receptor
C, D
126Streptococcus agalactiaeMutation(s): 0 
Gene Names: bag
UniProt
Find proteins for P27951 (Streptococcus agalactiae)
Explore P27951 
Go to UniProtKB:  P27951
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP27951
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 131.616α = 90
b = 131.616β = 90
c = 257.066γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing
PDB_EXTRACTdata extraction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-02
    Type: Initial release
  • Version 1.1: 2021-06-16
    Changes: Database references
  • Version 1.2: 2023-10-11
    Changes: Data collection, Database references, Refinement description