6UZ7

K.lactis 80S ribosome with p/PE tRNA and eIF5B


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Long-range interdomain communications in eIF5B regulate GTP hydrolysis and translation initiation.

Huang, B.Y.Fernandez, I.S.

(2020) Proc Natl Acad Sci U S A 117: 1429-1437

  • DOI: 10.1073/pnas.1916436117
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • Translation initiation controls protein synthesis by regulating the delivery of the first aminoacyl-tRNA to messenger RNAs (mRNAs). In eukaryotes, initiation is sophisticated, requiring dozens of protein factors and 2 GTP-regulated steps. The GTPase ...

    Translation initiation controls protein synthesis by regulating the delivery of the first aminoacyl-tRNA to messenger RNAs (mRNAs). In eukaryotes, initiation is sophisticated, requiring dozens of protein factors and 2 GTP-regulated steps. The GTPase eIF5B gates progression to elongation during the second GTP-regulated step. Using electron cryomicroscopy (cryo-EM), we imaged an in vitro initiation reaction which is set up with purified yeast components and designed to stall with eIF5B and a nonhydrolyzable GTP analog. A high-resolution reconstruction of a "dead-end" intermediate at 3.6 Å allowed us to visualize eIF5B in its ribosome-bound conformation. We identified a stretch of residues in eIF5B, located close to the γ-phosphate of GTP and centered around the universally conserved tyrosine 837 ( Saccharomyces cerevisiae numbering), that contacts the catalytic histidine of eIF5B (H480). Site-directed mutagenesis confirmed the essential role that these residues play in regulating ribosome binding, GTP hydrolysis, and translation initiation both in vitro and in vivo. Our results illustrate how eIF5B transmits the presence of a properly delivered initiator aminoacyl-tRNA at the P site to the distant GTPase center through interdomain communications and underscore the importance of the multidomain architecture in translation factors to sense and communicate ribosomal states.


    Organizational Affiliation

    Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032 isf2106@cumc.columbia.edu.



Macromolecules

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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
KLLA0D16027p
AA
254Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CQM3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CQM3

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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
KLLA0B07139p
AC
363Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CW41 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CW41

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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
KLLA0D06941p
AD
297Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CRR9 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CRR9

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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
KLLA0D03410p
AF
241Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CS71 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CS71

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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
KLLA0E00573p
AG
255Kluyveromyces lactisMutation(s): 0 
Find proteins for B4UN96 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  B4UN96

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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
KLLA0F04499p
AH
191Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CLA6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CLA6

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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
KLLA0D05643p
AI
220Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CRX7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CRX7

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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
KLLA0F08261p
AJ
174Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CKT4 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CKT4

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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L13
AL
199Kluyveromyces lactisMutation(s): 0 
Find proteins for Q875M0 (Kluyveromyces lactis)
Go to UniProtKB:  Q875M0

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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
KLLA0B13409p
AM
138Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CVB1 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CVB1

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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein L15
AN
204Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CJL7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CJL7

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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
KLLA0F04675p
AO
199Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CL98 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CL98

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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
KLLA0A06336p
AP
184Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CXQ6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CXQ6

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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
KLLA0A07227p
AQ
186Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CXL8 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CXL8

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Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L20
AS
172Kluyveromyces lactisMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.

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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
KLLA0E23651p
AT
160Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CM20 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CM20

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Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
KLLA0D05181p
AU
122Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CRZ8 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CRZ8

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Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L24
AW
155Kluyveromyces lactisMutation(s): 0 
Find proteins for P38665 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  P38665

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Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L25
AX
142Kluyveromyces lactisMutation(s): 0 
Find proteins for P48045 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  P48045

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Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
KLLA0B05742p
AY
127Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CW97 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CW97

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Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
KLLA0E03455p
AZ
136Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CPN9 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CPN9

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Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
RPL28
Ba
149Kluyveromyces lactisMutation(s): 0 
Find proteins for Q8J287 (Kluyveromyces lactis)
Go to UniProtKB:  Q8J287

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Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L29
Bb
62Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CQM1 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CQM1

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Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L30
Bc
105Kluyveromyces lactisMutation(s): 0 
Find proteins for P38664 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  P38664

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Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
KLLA0B02937p
Bd
114Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CWM6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CWM6

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Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
KLLA0E06843p
Be
130Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CP82 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CP82

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Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
KLLA0D07405p
Bf
107Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CRP7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CRP7

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Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
KLLA0C08371p
Bg
125Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CU17 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CU17

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Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
KLLA0F05247p
Bh
120Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CL71 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CL71

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Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L36
Bi
100Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CR18 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CR18

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Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein L37
Bj
88Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CUW0 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CUW0

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Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin fusion protein
Bm
128Kluyveromyces lactisMutation(s): 0 
Gene Names: ubi1
Find proteins for Q9Y854 (Kluyveromyces lactis)
Go to UniProtKB:  Q9Y854

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Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L41
Bn
23Kluyveromyces lactisMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.

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Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
KLLA0E05941p
Bp
92Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CPC5 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CPC5

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Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein
Bq
217Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CWR9 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CWR9

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Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
60S acidic ribosomal protein P0
Br
311Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CW89 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CW89

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Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
GDPCP
AK
147Kluyveromyces lactisMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.

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Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S0
A
254Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CN12 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CN12

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Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
KLLA0F09812p
C
259Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CKL3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CKL3

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Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
KLLA0D08305p
D
237Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CRK7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CRK7

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Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S4
E
261Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CWJ2 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CWJ2

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Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
KLLA0D10659p
F
227Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CRA3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CRA3

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Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S6
G
236Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CM04 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CM04

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Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S7
H
190Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CTD6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CTD6

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Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S8
I
201Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CMG3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CMG3

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Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
KLLA0E23673p
J
188Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CM18 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CM18

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Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
KLLA0B08173p
K
106Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CVZ5 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CVZ5

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Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S12
M
134Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CLU4 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CLU4

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Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
KLLA0F18040p
N
151Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CJK0 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CJK0

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Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S14
O
137Kluyveromyces lactisMutation(s): 0 
Find proteins for P27069 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  P27069

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Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S16
Q
143Kluyveromyces lactisMutation(s): 0 
Find proteins for Q875N2 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q875N2

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Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
KLLA0B01474p
R
136Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CWU3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CWU3

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Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
KLLA0A07194p
T
144Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CXM0 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CXM0

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Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
KLLA0F25542p
U
117Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CIM1 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CIM1

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Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S21
V
87Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CXT6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CXT6

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Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S22
W
130Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CW21 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CW21

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Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
RPS23
X
145Kluyveromyces lactisMutation(s): 0 
Find proteins for Q875M3 (Kluyveromyces lactis)
Go to UniProtKB:  Q875M3

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Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S24
Y
135Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CU44 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CU44

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Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S26
a
119Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CS01 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CS01

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Entity ID: 76
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S28
c
67Kluyveromyces lactisMutation(s): 0 
Find proteins for P33285 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  P33285

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Entity ID: 78
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S30
e
63Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CUH5 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CUH5

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Entity ID: 79
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-40S ribosomal protein S27a
f
150Kluyveromyces lactisMutation(s): 0 
Find proteins for P69061 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  P69061

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Entity ID: 80
MoleculeChainsSequence LengthOrganismDetails
KLLA0E12277p
g
326Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CNI7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CNI7

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Entity ID: 82
MoleculeChainsSequence LengthOrganismDetails
KLLA0F23265p
1
967Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CIX3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CIX3

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Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
KLLA0E12453p
AR
189Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CNH9 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CNH9

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Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
KLLA0E06997p
AV
137Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CP75 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CP75

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Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
KLLA0C18216p
Bk
78Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CSS8 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CSS8

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Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L39
Bl
51Kluyveromyces lactisMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.

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Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L44
Bo
106Kluyveromyces lactisMutation(s): 0 
Find proteins for P31027 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  P31027

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Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S1
B
255Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CWD0 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CWD0

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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L3
AB
387Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CJR7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CJR7

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Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
KLLA0A10483p
L
156Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CX80 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CX80

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Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
KLLA0F07843p
P
142Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CKV4 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CKV4

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Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
KLLA0B01562p
S
146Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CWT9 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CWT9

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Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S25
Z
108Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CW78 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CW78

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Entity ID: 75
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S27
b
82Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CNL2 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CNL2

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Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S29
d
56Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CPG3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CPG3

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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
KLLA0B04686p
AE
175Kluyveromyces lactisMutation(s): 0 
Find proteins for Q6CWE7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Go to UniProtKB:  Q6CWE7

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Entity ID: 1
MoleculeChainsLengthOrganism
25S ribosomal RNA53364Kluyveromyces lactis

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Entity ID: 2
MoleculeChainsLengthOrganism
RNA (121-MER)7121Kluyveromyces lactis

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Entity ID: 3
MoleculeChainsLengthOrganism
5.8S ribosomal RNA82825Kluyveromyces lactis

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Entity ID: 81
MoleculeChainsLengthOrganism
18S ribosomal RNA21798Kluyveromyces lactis

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Entity ID: 83
MoleculeChainsLengthOrganism
RNA (76-MER)376Saccharomyces cerevisiae
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GCP
Query on GCP

Download CCD File 
1
PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
C11 H18 N5 O13 P3
PHBDHXOBFUBCJD-KQYNXXCUSA-N
 Ligand Interaction
ZN
Query on ZN

Download CCD File 
Bj, Bm, Bo, a, b, f
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-01-15
    Type: Initial release
  • Version 1.1: 2020-02-05
    Changes: Database references