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Download EndnoteCrystal structure of unknown function protein yfdX from Shigella flexneri
Chang, C., Skarina, T., Savchenko, A., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
6UXT
Crystal structure of unknown function protein yfdX from Shigella flexneri
- DOI: 10.2210/pdb6UXT/pdb
- Classification: STRUCTURAL GENOMICS
- Organism(s): Shigella flexneri 2a
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2019-11-08 Released: 2019-11-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.797 Å
- R-Value Free: 0.200
- R-Value Work: 0.170
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| YfdX protein | A, B, C, D, E, F, G, H | 186 | Shigella flexneri 2a | Mutation(s): 0 Gene Names: yfdX |
Find proteins for A0A2Y2P124 (Shigella flexneri 2a) Go to UniProtKB: A0A2Y2P124 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | F | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HEPES C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | Ligand Interaction | |
| PGE Query on PGE | B, E | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | Ligand Interaction | |
| PEG Query on PEG | C | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.797 Å
- R-Value Free: 0.200
- R-Value Work: 0.170
- Space Group: P 1
- Diffraction Data DOI:
10.18430/m36uxt Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 51.579 | α = 97.35 |
| b = 92.920 | β = 98.44 |
| c = 93.469 | γ = 95.46 |
| Software Name | Purpose |
|---|---|
| PDB_EXTRACT | data extraction |
| SCALEPACK | data scaling |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Deposited Date: 2019-11-08
- Released Date: 2019-11-20
- Deposition Author(s): Chang, C., Skarina, T., Savchenko, A., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
