6UW7

The crystal structure of FbiA from Mycobacterium smegmatis, Dehydro-F420-0 bound form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.34 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.163 
  • R-Value Observed: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cellular and structural basis of synthesis of the unique intermediate dehydro-F420-0 in mycobacteria

Grinter, R.Ney, B.Brammananth, R.Barlow, C.K.Cordero, P.R.F.Gillett, D.L.Izore, T.Cryle, M.J.Harold, L.K.Cook, G.M.Taiaroa, G.Williamson, D.A.Warden, A.C.Oakeshott, J.G.Taylor, M.C.Crellin, P.K.Jackson, C.J.Schittenhelm, R.B.Coppel, R.L.Greening, C.

(2020) Msystems 


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phosphoenolpyruvate transferase
A, B
327Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: fbiAMSMEG_1830MSMEI_1787
EC: 2.7.8.28
Find proteins for A0QTG2 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Go to UniProtKB:  A0QTG2
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
QMD
Query on QMD

Download CCD File 
B
2-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-[2,4,8-tris(oxidanylidene)-1,9-dihydropyrimido[4,5-b]quinolin-10-yl]pentoxy]phosphoryl]oxyprop-2-enoic acid
C19 H20 N3 O12 P
QMXZMTIOXGWNQW-ZNMIVQPWSA-N
 Ligand Interaction
GOL
Query on GOL

Download CCD File 
A, B
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download CCD File 
B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.34 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.163 
  • R-Value Observed: 0.166 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 46.12α = 90
b = 73.3β = 96.28
c = 90.338γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Health and Medical Research Council (NHMRC, Australia)AustraliaAPP1178715
National Health and Medical Research Council (NHMRC, Australia)AustraliaAPP1142699
National Health and Medical Research Council (NHMRC, Australia)AustraliaAPP1139832

Revision History 

  • Version 1.0: 2020-05-13
    Type: Initial release
  • Version 1.1: 2020-05-20
    Changes: Author supporting evidence, Database references, Structure summary