6UUN

CryoEM Structure of the active Adrenomedullin 1 receptor G protein complex with adrenomedullin peptide


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure and Dynamics of Adrenomedullin Receptors AM1and AM2Reveal Key Mechanisms in the Control of Receptor Phenotype by Receptor Activity-Modifying Proteins.

Liang, Y.L.Belousoff, M.J.Fletcher, M.M.Zhang, X.Khoshouei, M.Deganutti, G.Koole, C.Furness, S.G.B.Miller, L.J.Hay, D.L.Christopoulos, A.Reynolds, C.A.Danev, R.Wootten, D.Sexton, P.M.

(2020) Acs Pharmacol Transl Sci 3: 263-284

  • DOI: 10.1021/acsptsci.9b00080
  • Primary Citation of Related Structures:  
    6UUN, 6UUS, 6UVA

  • PubMed Abstract: 
  • Adrenomedullin (AM) and calcitonin gene-related peptide (CGRP) receptors are critically important for metabolism, vascular tone, and inflammatory response. AM receptors are also required for normal lymphatic and blood vascular development and angiogenesi ...

    Adrenomedullin (AM) and calcitonin gene-related peptide (CGRP) receptors are critically important for metabolism, vascular tone, and inflammatory response. AM receptors are also required for normal lymphatic and blood vascular development and angiogenesis. They play a pivotal role in embryo implantation and fertility and can provide protection against hypoxic and oxidative stress. CGRP and AM receptors are heterodimers of the calcitonin receptor-like receptor (CLR) and receptor activity-modifying protein 1 (RAMP1) (CGRPR), as well as RAMP2 or RAMP3 (AM 1 R and AM 2 R, respectively). However, the mechanistic basis for RAMP modulation of CLR phenotype is unclear. In this study, we report the cryo-EM structure of the AM 1 R in complex with AM and Gs at a global resolution of 3.0 Å, and structures of the AM 2 R in complex with either AM or intermedin/adrenomedullin 2 (AM2) and Gs at 2.4 and 2.3 Å, respectively. The structures reveal distinctions in the primary orientation of the extracellular domains (ECDs) relative to the receptor core and distinct positioning of extracellular loop 3 (ECL3) that are receptor-dependent. Analysis of dynamic data present in the cryo-EM micrographs revealed additional distinctions in the extent of mobility of the ECDs. Chimeric exchange of the linker region of the RAMPs connecting the TM helix and the ECD supports a role for this segment in controlling receptor phenotype. Moreover, a subset of the motions of the ECD appeared coordinated with motions of the G protein relative to the receptor core, suggesting that receptor ECD dynamics could influence G protein interactions. This work provides fundamental advances in our understanding of GPCR function and how this can be allosterically modulated by accessory proteins.


    Organizational Affiliation

    School of Pharmacy, Fudan University, Shanghai 201203, China.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short A394Homo sapiensMutation(s): 0 
Gene Names: GNASGNAS1GSP
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
G Protein-Coupled Receptors: Class B1
Protein: 
Adrenomedullin 1 (AM1) receptor G protein complex with adrenomedullin peptide
Find proteins for P63092 (Homo sapiens)
Explore P63092 
Go to UniProtKB:  P63092
NIH Common Fund Data Resources
PHAROS:  P63092
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 B350Homo sapiensMutation(s): 0 
Gene Names: GNB1
Find proteins for P62873 (Homo sapiens)
Explore P62873 
Go to UniProtKB:  P62873
NIH Common Fund Data Resources
PHAROS:  P62873
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Receptor activity-modifying protein 2 E156Homo sapiensMutation(s): 0 
Gene Names: RAMP2
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
G Protein-Coupled Receptors: Class B1
Protein: 
Adrenomedullin 1 (AM1) receptor G protein complex with adrenomedullin peptide
Find proteins for O60895 (Homo sapiens)
Explore O60895 
Go to UniProtKB:  O60895
NIH Common Fund Data Resources
PHAROS:  O60895
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 G71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
G Protein-Coupled Receptors: Class B1
Protein: 
Adrenomedullin 1 (AM1) receptor G protein complex with adrenomedullin peptide
Find proteins for P59768 (Homo sapiens)
Explore P59768 
Go to UniProtKB:  P59768
NIH Common Fund Data Resources
PHAROS:  P59768
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Nanobody 35 N138Lama glamaMutation(s): 0 
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
ADM P53Homo sapiensMutation(s): 1 
Gene Names: ADMAM
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
G Protein-Coupled Receptors: Class B1
Protein: 
Adrenomedullin 1 (AM1) receptor G protein complex with adrenomedullin peptide
Find proteins for P35318 (Homo sapiens)
Explore P35318 
Go to UniProtKB:  P35318
NIH Common Fund Data Resources
PHAROS:  P35318
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Calcitonin gene-related peptide type 1 receptor R490Homo sapiensMutation(s): 0 
Gene Names: CALCRLCGRPR
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
G Protein-Coupled Receptors: Class B1
Protein: 
Adrenomedullin 1 (AM1) receptor G protein complex with adrenomedullin peptide
Find proteins for Q16602 (Homo sapiens)
Explore Q16602 
Go to UniProtKB:  Q16602
NIH Common Fund Data Resources
PHAROS:  Q16602
Protein Feature View
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Health and Medical Research Council (NHMRC, Australia)Australia1120919
National Health and Medical Research Council (NHMRC, Australia)Australia1159006
National Health and Medical Research Council (NHMRC, Australia)Australia1150083
Japan Society for the Promotion of Science (JSPS)JapanKAKENHI #18H06043
Japan Science and TechnologyJapan#18069571

Revision History 

  • Version 1.0: 2020-03-25
    Type: Initial release
  • Version 1.1: 2020-04-29
    Changes: Database references