6URS | pdb_00006urs

Sleeping Beauty transposase PAI subdomain mutant - H19Y

PDB DOI: https://doi.org/10.2210/pdb6URS/pdb
BMRB: 30680

Classification: DNA BINDING PROTEIN
Organism(s): Oncorhynchus mykiss
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-10-24 Released: 2020-10-28
Deposition Author(s): Nesmelova, I.V., Leighton, G.O., Yan, C., Lustig, J., Corona, R.I., Guo, J.T., Ivics, Z.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Science Foundation (NSF, United States)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 8
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 6URS

This is version 1.2 of the entry. See complete history.

Literature

H19Y mutation in the primary DNA-recognition subdomain of the Sleeping Beauty transposase improves structural stability, transposon DNA-binding and transposition

Nesmelova, I.V., Leighton, G.O., Yan, C., Lustig, J., Corona, R.I., Guo, J.T., Ivics, Z.

To be published.

Macromolecule Content

Total Structure Weight: 6.39 kDa
Atom Count: 448
Modeled Residue Count: 57
Deposited Residue Count: 57
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sleeping Beauty transposase PAI subdomain	A	57	Oncorhynchus mykiss	Mutation(s): 0 Gene Names: GSONMT00045019001
UniProt
Find proteins for A0A060XYS9 (Oncorhynchus mykiss) Explore A0A060XYS9 Go to UniProtKB: A0A060XYS9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A060XYS9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 8
Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-10-28

Deposition Author(s):

Nesmelova, I.V.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R15GM128100
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R15GM112076
National Science Foundation (NSF, United States)	United States	DBI0844749
National Science Foundation (NSF, United States)	United States	DBI1356459

Revision History (Full details and data files)

Version 1.0: 2020-10-28
Type: Initial release
Version 1.1: 2023-06-14
Changes: Database references, Other
Version 1.2: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.