6UCT | pdb_00006uct

Crystal structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (C-arm deletion mutant)

• PDB DOI: https://doi.org/10.2210/pdb6UCT/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Mal de Rio Cuarto virus
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2019-09-17 Released: 2021-03-17 
• Deposition Author(s): Llauger, G., Klinke, S., Monti, D., Sycz, G., Cerutti, M.L., Goldbaum, F.A., del Vas, M., Otero, L.H.
• Funding Organization(s): National Research Council (NRC, Argentina)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.47 Å
• R-Value Free: 
  0.277 (Depositor) 
• R-Value Work: 
  0.220 (Depositor) 
• R-Value Observed: 
  0.223 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (C-arm deletion mutant)

Llauger, G., Klinke, S., Monti, D., Sycz, G., Cerutti, M.L., Goldbaum, F.A., del Vas, M., Otero, L.H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: light scattering

Macromolecule Content 

• Total Structure Weight: 37.26 kDa 
• Atom Count: 2,013 
• Modeled Residue Count: 243 
• Deposited Residue Count: 319 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
p9-1	A	319	Mal de Rio Cuarto virus	Mutation(s): 0
UniProt
Find proteins for D9U542 (Mal de Rio Cuarto virus) Explore D9U542  Go to UniProtKB:  D9U542

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.47 Å
• R-Value Free:  0.277 (Depositor) 
• R-Value Work:  0.220 (Depositor) 
• R-Value Observed: 0.223 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.557	α = 90
b = 86.557	β = 90
c = 95.598	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Currently 6UCT does not have a validation slider image.

Entry History & Funding Information

Deposition Data

• Released Date: 2021-03-17 
Deposition Author(s): Llauger, G., Klinke, S., Monti, D., Sycz, G., Cerutti, M.L., Goldbaum, F.A., del Vas, M., Otero, L.H.

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Funding Organization	Location	Grant Number
National Research Council (NRC, Argentina)	Argentina	PICT 2015-0621
National Research Council (NRC, Argentina)	Argentina	PICT 2016-1425
National Research Council (NRC, Argentina)	Argentina	PICT-2014-3754
National Research Council (NRC, Argentina)	Argentina	PICT-2017-2537

Revision History  

• Version 1.0: 2021-03-17
  Type: Initial release
  
• Version 1.1: 2023-10-11
  Changes: Data collection, Database references, Refinement description