6U94 | pdb_00006u94

Structure of RND efflux system, outer membrane lipoprotein, NodT family from Burkholderia mallei ATCC 23344

PDB DOI: https://doi.org/10.2210/pdb6U94/pdb

Classification: LIPID TRANSPORT
Organism(s): Burkholderia mallei ATCC 23344
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-09-06 Released: 2019-10-02
Deposition Author(s): Horanyi, P.S., Fox III, D., Abendroth, J., Lorimer, D., Edwards, T., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free:
0.238 (DCC)
R-Value Work:
0.219 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6U94

This is version 1.1 of the entry. See complete history.

Literature

Structure of RND efflux system, outer membrane lipoprotein, NodT family from Burkholderia mallei ATCC 23344

Horanyi, P.S., Fox III, D., Abendroth, J., Lorimer, D., Edwards, T.

To be published.

Macromolecule Content

Total Structure Weight: 64.25 kDa
Atom Count: 2,934
Modeled Residue Count: 385
Deposited Residue Count: 600
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RND efflux system, outer membrane lipoprotein, NodT family	A	600	Burkholderia mallei ATCC 23344	Mutation(s): 0 Gene Names: BMAA1392
UniProt
Find proteins for A0A0H2WCA9 (Burkholderia mallei (strain ATCC 23344)) Explore A0A0H2WCA9 Go to UniProtKB: A0A0H2WCA9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H2WCA9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain D [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain D [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A], D [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.238 (DCC)
R-Value Work: 0.219 (DCC)

Diffraction Data:

Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 93.44	α = 90
b = 93.44	β = 90
c = 370.79	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
MR-Rosetta	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-10-02

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2019-10-02
Type: Initial release
Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.