6U5D

RT XFEL structure of CypA solved using LCP injection system


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.143 
  • R-Value Observed: 0.144 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals

Wolff, A.M.Young, I.D.Sierra, R.G.Brewster, A.S.Martynowycz, M.W.Nango, E.Sugahara, M.Nakane, T.Ito, K.Aquila, A.Bhowmick, A.Biel, J.T.Carbajo, S.Cohen, A.E.Cortez, S.Gonzalez, A.Hino, T.Im, D.Koralek, J.D.Kubo, M.Lazarou, T.S.Nomura, T.Owada, S.Samelson, A.Tanaka, T.Tanaka, R.Thompson, E.M.van den Bedem, H.Woldeyes, R.A.Yumoto, F.Zhao, W.Tono, K.Boutet, S.Iwata, S.Gonen, T.Sauter, N.K.Fraser, J.S.Thompson, M.C.

(2020) IUCrJ 7: 306-323


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Peptidyl-prolyl cis-trans isomerase A A165Homo sapiensMutation(s): 0 
Gene Names: PPIACYPA
EC: 5.2.1.8
Find proteins for P62937 (Homo sapiens)
Explore P62937 
Go to UniProtKB:  P62937
NIH Common Fund Data Resources
PHAROS:  P62937
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.143 
  • R-Value Observed: 0.144 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.01α = 90
b = 52.61β = 90
c = 89.32γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
DIALSdata collection
DIALSdata reduction
DIALSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM123159
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM124149
National Science Foundation (NSF, United States)United StatesSTC-1231306
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM117126

Revision History  (Full details and data files)

  • Version 1.0: 2020-01-29
    Type: Initial release
  • Version 1.1: 2020-02-12
    Changes: Database references, Structure summary
  • Version 1.2: 2020-03-11
    Changes: Database references