6U3Q

The atomic structure of a human adeno-associated virus capsid isolate (AAVhu69/AAVv66)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.46 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural characterization of a novel human adeno-associated virus capsid with neurotropic properties.

Hsu, H.L.Brown, A.Loveland, A.B.Lotun, A.Xu, M.Luo, L.Xu, G.Li, J.Ren, L.Su, Q.Gessler, D.J.Wei, Y.Tai, P.W.L.Korostelev, A.A.Gao, G.

(2020) Nat Commun 11: 3279-3279

  • DOI: https://doi.org/10.1038/s41467-020-17047-1
  • Primary Citation of Related Structures:  
    6U3Q

  • PubMed Abstract: 

    Recombinant adeno-associated viruses (rAAVs) are currently considered the safest and most reliable gene delivery vehicles for human gene therapy. Three serotype capsids, AAV1, AAV2, and AAV9, have been approved for commercial use in patients, but they may not be suitable for all therapeutic contexts. Here, we describe a novel capsid identified in a human clinical sample by high-throughput, long-read sequencing. The capsid, which we have named AAVv66, shares high sequence similarity with AAV2. We demonstrate that compared to AAV2, AAVv66 exhibits enhanced production yields, virion stability, and CNS transduction. Unique structural properties of AAVv66 visualized by cryo-EM at 2.5-Å resolution, suggest that critical residues at the three-fold protrusion and at the interface of the five-fold axis of symmetry likely contribute to the beneficial characteristics of AAVv66. Our findings underscore the potential of AAVv66 as a gene therapy vector.


  • Organizational Affiliation

    Horae Gene Therapy Center, University of Massachusetts Medical School, Worcester, MA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP1735Adeno-associated virusMutation(s): 0 
UniProt
Find proteins for Q670R6 (Adeno-associated virus)
Explore Q670R6 
Go to UniProtKB:  Q670R6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ670R6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.46 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United States2R01NS076991
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United States5P01HL131471
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United States5P01HD080642
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United States5R01AI121135
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesUG3HL147367
Department of Defense (DOD, United States)United StatesW81XWH-17-1-0212
Bill & Melinda Gates FoundationUnited StatesOPP1132169

Revision History  (Full details and data files)

  • Version 1.0: 2020-05-27
    Type: Initial release
  • Version 1.1: 2020-07-15
    Changes: Database references
  • Version 1.2: 2024-03-20
    Changes: Data collection, Database references