6TVZ

Structure of a psychrophilic CCA-adding enzyme crystallized in the XtalController device

• PDB DOI: https://doi.org/10.2210/pdb6TVZ/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Planococcus halocryophilus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2020-01-10 Released: 2020-12-16 
• Deposition Author(s): de Wijn, R., Rollet, K., Coudray, L., Hennig, O., Betat, H., Moerl, M., Lorber, B., Sauter, C.
• Funding Organization(s): French National Research Agency

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.28 Å
• R-Value Free: 0.257 
• R-Value Work: 0.214 
• R-Value Observed: 0.216 

Literature

Monitoring the Production of High Diffraction-Quality Crystals of Two Enzymes in Real Time Using In Situ Dynamic Light Scattering

de Wijn, R., Rollet, K., Engilberge, S., McEwen, A.G., Hennig, O., Betat, H., Moerl, M., Riobe, F., Maury, O., Girard, E., Benas, P., Lorber, B., Sauter, C.

(2020) Crystals (Basel) 

• DOI: https://doi.org/10.3390/cryst10020065

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration, light scattering

Macromolecule Content

• Total Structure Weight: 49.08 kDa 
• Atom Count: 3,130 
• Modelled Residue Count: 366 
• Deposited Residue Count: 420 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CCA-adding enzyme	A	420	Planococcus halocryophilus	Mutation(s): 0  Gene Names: BBI08_05760
UniProt
Find proteins for A0A1C7DQ98 (Planococcus halocryophilus) Explore A0A1C7DQ98  Go to UniProtKB:  A0A1C7DQ98

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PO4	B [auth A], C [auth A]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K
GOL	D [auth A], E [auth A], F [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
ACT	G [auth A], H [auth A]	ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.28 Å
• R-Value Free: 0.257 
• R-Value Work: 0.214 
• R-Value Observed: 0.216 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.53	α = 90
b = 70.53	β = 90
c = 291.48	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-12-16 
Deposition Author(s): de Wijn, R., Rollet, K., Coudray, L., Hennig, O., Betat, H., Moerl, M., Lorber, B., Sauter, C.

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Funding Organization	Location	Grant Number
French National Research Agency	France	ANR-10-LABX-0036_NETRNA
French National Research Agency	France	ANR-11-LABX-0057_MITOCROSS
French National Research Agency	France	ANR-10-LABX-0036_INRT

Revision History  

• Version 1.0: 2020-12-16
  Type: Initial release
  
• Version 1.1: 2024-01-24
  Changes: Data collection, Database references, Refinement description