6TVK

Alpha-L-fucosidase isoenzyme 2 from Paenibacillus thiaminolyticus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.189 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The first structure-function study of GH151 alpha-l-fucosidase uncovers new oligomerization pattern, active site complementation, and selective substrate specificity

Koval'ova, T.Koval, T.Stransky, J.Kolenko, P.Duskova, J.Svecova, L.Vodickova, P.Spiwok, V.Benesova, E.Lipovova, P.Dohnalek, J.

(2022) FEBS J 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Alpha-L-fucosidaseA [auth AAA]689Paenibacillus thiaminolyticusMutation(s): 0 
Gene Names: aLfuk2NCTC11027_00201
UniProt
Find proteins for K0JCW6 (Paenibacillus thiaminolyticus)
Explore K0JCW6 
Go to UniProtKB:  K0JCW6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupK0JCW6
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
TBR
Query on TBR

Download Ideal Coordinates CCD File 
B [auth AAA]HEXATANTALUM DODECABROMIDE
Br12 Ta6
YWYIQTPPCOBSGN-UHFFFAOYSA-M
 Ligand Interaction
SO4
Query on SO4

Download Ideal Coordinates CCD File 
G [auth AAA]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
D [auth AAA],
E [auth AAA],
F [auth AAA]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
C [auth AAA]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CSO
Query on CSO
A [auth AAA]L-PEPTIDE LINKINGC3 H7 N O3 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.189 
  • Space Group: P 64 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 125.118α = 90
b = 125.118β = 90
c = 231.905γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
AutoSolphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Czech Academy of SciencesCzech Republic86652036
European Regional Development FundCzech RepublicCZ.02.1.01/0.0/0.0/15_003/0000447
European Regional Development FundCzech RepublicCZ.02.1.01/0.0/0.0/16_013/0001776
Ministry of Education, Youth and Sports of the Czech RepublicCzech RepublicLM2015043
European Regional Development FundCzech RepublicCZ.1.05/1.1.00/02.0109

Revision History  (Full details and data files)

  • Version 1.0: 2021-07-21
    Type: Initial release
  • Version 1.1: 2022-05-18
    Changes: Database references