6TRO

Crystal structure of the T-cell receptor GVY01 bound to HLA A2*01-GVYDGREHTV


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.216 

wwPDB Validation   3D Report Full Report



Literature

HLA-bridge guides indirect TCR-peptide specificity for MAGE-A4

Coles, C.H.McMurran, C.Lloyd, A.Hock, M.Hibbert, L.Raman, M.C.C.Hayes, C.Lupardus, P.J.Cole, D.K.Harper, S.

(2020) J Biol Chem 


Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
MHC class I antigenA276Homo sapiensMutation(s): 0 
Gene Names: HLA-AHLA
Find proteins for Q53Z42 (Homo sapiens)
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Go to UniProtKB:  Q53Z42
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-2-microglobulinB100Homo sapiensMutation(s): 0 
Gene Names: B2MCDABP0092HDCMA22P
Find proteins for P61769 (Homo sapiens)
Explore P61769 
Go to UniProtKB:  P61769
NIH Common Fund Data Resources
PHAROS  P61769
Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
MAGE-A4 peptide (amino acids 230-239)C10Homo sapiensMutation(s): 0 
Gene Names: MAGEA4MAGE4
Find proteins for P43358 (Homo sapiens)
Explore P43358 
Go to UniProtKB:  P43358
NIH Common Fund Data Resources
PHAROS  P43358
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  • Reference Sequence
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
T-cell receptor alpha chainD208Homo sapiensMutation(s): 0 
Protein Feature View
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  • Reference Sequence
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
T-cell receptor beta chainE247Homo sapiensMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.216 
  • Space Group: P 64 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 220.04α = 90
b = 220.04β = 90
c = 96.83γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
xia2data scaling
PDB_EXTRACTdata extraction
xia2data reduction
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-06-24
    Type: Initial release