Download MendeleyHLA-bridge guides indirect TCR-peptide specificity for MAGE-A4
Coles, C.H., McMurran, C., Lloyd, A., Hock, M., Hibbert, L., Raman, M.C.C., Hayes, C., Lupardus, P.J., Cole, D.K., Harper, S.(2020) J Biol Chem
6TRO
Crystal structure of the T-cell receptor GVY01 bound to HLA A2*01-GVYDGREHTV
- DOI: 10.2210/pdb6TRO/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2019-12-19 Released: 2020-06-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.270
- R-Value Work: 0.213
- R-Value Observed: 0.216
wwPDB Validation 3D Report Full Report
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MHC class I antigen | A | 276 | Homo sapiens | Mutation(s): 0 Gene Names: HLA-A, HLA |  |
Find proteins for Q53Z42 (Homo sapiens) Explore Q53Z42 Go to UniProtKB: Q53Z42 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-2-microglobulin | B | 100 | Homo sapiens | Mutation(s): 0 Gene Names: B2M, CDABP0092, HDCMA22P |  |
Find proteins for P61769 (Homo sapiens) Explore P61769 Go to UniProtKB: P61769 | |||||
NIH Common Fund Data Resources | |||||
Protein Feature ViewExpand | |||||
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- Find similar proteins by: Sequence | Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MAGE-A4 peptide (amino acids 230-239) | C | 10 | Homo sapiens | Mutation(s): 0 Gene Names: MAGEA4, MAGE4 |  |
Find proteins for P43358 (Homo sapiens) Explore P43358 Go to UniProtKB: P43358 | |||||
NIH Common Fund Data Resources | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| T-cell receptor alpha chain | D | 208 | Homo sapiens | Mutation(s): 0 |  |
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| T-cell receptor beta chain | E | 247 | Homo sapiens | Mutation(s): 0 |  |
Protein Feature ViewExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.270
- R-Value Work: 0.213
- R-Value Observed: 0.216
- Space Group: P 64 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 220.04 | α = 90 |
| b = 220.04 | β = 90 |
| c = 96.83 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| xia2 | data scaling |
| PDB_EXTRACT | data extraction |
| xia2 | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2019-12-19
- Released Date: 2020-06-24 Deposition Author(s): Coles, C.H., McMurran, C., Lloyd, A., Hibbert, L., Lupardus, P.J., Cole, D.K., Harper, S.
