6TMP

Rapid optimisation of fragments and hits to lead compounds from screening of crude reaction mixtures


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report



Literature

Rapid optimisation of fragments and hits to lead compounds from screening of crude reaction mixtures

Baker, L.M.Aimon, A.Murray, J.B.Surgenor, A.E.Matassova, N.Roughley, S.D.Collins, P.M.Krojer, T.von Delft, F.Hubbard, R.E.

(2020) Commun Chem 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrialAAA394Homo sapiensMutation(s): 0 
Gene Names: PDK2PDHK2
EC: 2.7.11.2
Find proteins for Q15119 (Homo sapiens)
Explore Q15119 
Go to UniProtKB:  Q15119
NIH Common Fund Data Resources
PHAROS  Q15119
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NN8
Query on NN8

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AAA
[2,4-bis(oxidanyl)phenyl]-[(1~{R})-6,7-dimethoxy-1-pyridin-3-yl-3,4-dihydro-1~{H}-isoquinolin-2-yl]methanone
C23 H22 N2 O5
CLPZEFHDKKRVHY-QFIPXVFZSA-N
 Ligand Interaction
TF3
Query on TF3

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AAA
N-(2-AMINOETHYL)-2-{3-CHLORO-4-[(4-ISOPROPYLBENZYL)OXY]PHENYL} ACETAMIDE
C20 H25 Cl N2 O2
DFXJYVQAAFOZDP-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download CCD File 
AAA
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.172 
  • Space Group: P 64
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 109.292α = 90
b = 109.292β = 90
c = 83.654γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
Aimlessdata scaling
REFMACphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-10-14
    Type: Initial release