6T5T

Crystal structure of Archaeoglobus fulgidus Argonaute protein with cognate DNA oligoduplex 5'-pATTGTGGCCACAAT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.180 

wwPDB Validation   3D Report Full Report



Literature

Crystal structure of Archaeoglobus fulgidus Argonaute protein with cognate DNA oligoduplex 5'-pATTGTGGCCACAAT

Golovinas, E.Manakova, E.Sasnauskas, G.Zaremba, M.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Piwi protein AF_1318A441Archaeoglobus fulgidus DSM 4304Mutation(s): 0 
Gene Names: AF_1318
Find proteins for O28951 (Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
Explore O28951 
Go to UniProtKB:  O28951
Protein Feature View
Expand
  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    5'-D(*AP*TP*TP*GP*TP*GP*GP*CP*CP*AP*CP*AP*AP*TP)-3'R, S14Escherichia coli
    Small Molecules
    Ligands 4 Unique
    IDChainsName / Formula / InChI Key2D Diagram3D Interactions
    BME
    Query on BME

    Download CCD File 
    A
    BETA-MERCAPTOETHANOL
    C2 H6 O S
    DGVVWUTYPXICAM-UHFFFAOYSA-N
     Ligand Interaction
    K
    Query on K

    Download CCD File 
    A
    POTASSIUM ION
    K
    NPYPAHLBTDXSSS-UHFFFAOYSA-N
     Ligand Interaction
    CL
    Query on CL

    Download CCD File 
    A
    CHLORIDE ION
    Cl
    VEXZGXHMUGYJMC-UHFFFAOYSA-M
     Ligand Interaction
    MG
    Query on MG

    Download CCD File 
    A
    MAGNESIUM ION
    Mg
    JLVVSXFLKOJNIY-UHFFFAOYSA-N
     Ligand Interaction
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 1.70 Å
    • R-Value Free: 0.213 
    • R-Value Work: 0.180 
    • Space Group: P 2 21 21
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 52.098α = 90
    b = 99.551β = 90
    c = 109.901γ = 90
    Software Package:
    Software NamePurpose
    XDSdata reduction
    SCALAdata scaling
    MOLREPphasing
    PHENIXrefinement
    PDB_EXTRACTdata extraction

    Structure Validation

    View Full Validation Report



    Entry History 

    Deposition Data

    Revision History 

    • Version 1.0: 2020-11-18
      Type: Initial release