6SY0

Structure of the Plasmodium falciparum SIP2 DNA-binding AP2 tandem repeat in complex with two SPE2 half-sites


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.318 
  • R-Value Work: 0.274 
  • R-Value Observed: 0.276 

wwPDB Validation   3D Report Full Report



Literature

Structural and functional analysis of the Plasmodium falciparum SIP2 DNA binding domain

Niederwieser, I.Reiter, D.Kantsadi, A.Voss, T.Vakonakis, I.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Transcription factor with AP2 domain(S)ABC139Plasmodium falciparum 3D7Mutation(s): 0 
Gene Names: PF3D7_0604100
Find proteins for C6KSN9 (Plasmodium falciparum (isolate 3D7))
Explore C6KSN9 
Go to UniProtKB:  C6KSN9
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*GP*GP*TP*GP*CP*AP*CP*CP*TP*AP*GP*GP*TP*GP*CP*AP*CP*C)-3')E, F, G, H, K, L18Plasmodium falciparum 3D7
    Small Molecules
    Modified Residues  1 Unique
    IDChainsTypeFormula2D DiagramParent
    CAF
    Query on CAF
    A,B,CL-PEPTIDE LINKINGC5 H12 As N O3 SCYS
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 3.10 Å
    • R-Value Free: 0.318 
    • R-Value Work: 0.274 
    • R-Value Observed: 0.276 
    • Space Group: P 1 2 1
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 80.35α = 90
    b = 43.72β = 92.17
    c = 153.71γ = 90
    Software Package:
    Software NamePurpose
    PHENIXrefinement
    XDSdata reduction
    XSCALEdata scaling
    PHENIXphasing

    Structure Validation

    View Full Validation Report



    Entry History & Funding Information

    Deposition Data


    Funding OrganizationLocationGrant Number
    Wellcome TrustUnited Kingdom--

    Revision History 

    • Version 1.0: 2020-10-07
      Type: Initial release