6SWK | pdb_00006swk

The kinase domain of GanS, a histidine kinase from Geobacillus stearothermophilus

PDB DOI: https://doi.org/10.2210/pdb6SWK/pdb

Classification: SIGNALING PROTEIN
Organism(s): Geobacillus stearothermophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-09-22 Released: 2020-10-14
Deposition Author(s): Lansky, S., Shiradsky, M., Lavid, N., Shoham, Y., Shoham, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.74 Å
R-Value Free:
0.252 (Depositor), 0.273 (DCC)
R-Value Work:
0.219 (Depositor)
R-Value Observed:
0.221 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6SWK

This is version 1.1 of the entry. See complete history.

Literature

The kinase domain of GanS, a histidine kinase from Geobacillus stearothermophilus

Lansky, S., Shiradsky, M., Lavid, N., Shoham, Y., Shoham, G.

To be published.

Macromolecule Content

Total Structure Weight: 24.68 kDa
Atom Count: 1,755
Modeled Residue Count: 203
Deposited Residue Count: 218
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histidine kinase	A	218	Geobacillus stearothermophilus	Mutation(s): 0 Gene Names: GT94_12015 EC: 2.7.13.3
UniProt
Find proteins for W8QF84 (Geobacillus stearothermophilus) Explore W8QF84 Go to UniProtKB: W8QF84
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	W8QF84
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.74 Å
R-Value Free: 0.252 (Depositor), 0.273 (DCC)
R-Value Work: 0.219 (Depositor)
R-Value Observed: 0.221 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.95	α = 90
b = 80.16	β = 90
c = 116.88	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2020-10-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-10-14
Type: Initial release
Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.